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Expression Template: Les.3358.1.S1_a_at

Template Basic Information

Template name:	Les.3358.1.S1_a_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U578741
External db links:	GenBank: AI771286

Annotations for unigene SGN-U578741 (manual: 2 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLED-7-A15, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: arginine decarboxylase 1 Annotation Keywords: hormone responses; hormone biosynthesis; polyamine biosynthesis; polyamine responses

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|59668404\|emb\|CAI39242.1\|	1334	100	2121 bp (77.1%)	3
Description:	arginine decarboxylase [Solanum lycopersicum]
arabidopsis	blastx	At4G34710.1	915	70.62	2055 bp (74.7%)	3
Description:	Symbols: SPE2, ADC2 \| ADC2 (ARGININE DECARBOXYLASE 2) \| chr4:16560320-16562455 REVERSE
swissprot	blastx	O23141	915	70.62	2055 bp (74.7%)	3
Description:	Arginine decarboxylase 2 OS=Arabidopsis thaliana GN=SPE2 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.3358.1.S1_a_at:ProbePair0	PM	data not available	data not available	data not available
Les.3358.1.S1_a_at:ProbePair4	PM	data not available	data not available	data not available
Les.3358.1.S1_a_at:ProbePair5	PM	data not available	data not available	data not available
Les.3358.1.S1_a_at:ProbePair6	PM	data not available	data not available	data not available
Les.3358.1.S1_a_at:ProbePair7	PM	data not available	data not available	data not available
Les.3358.1.S1_a_at:ProbePair8	PM	data not available	data not available	data not available
Les.3358.1.S1_a_at:ProbePair9	PM	data not available	data not available	data not available
Les.3358.1.S1_a_at:ProbePair1	PM	data not available	data not available	data not available
Les.3358.1.S1_a_at:ProbePair10	PM	data not available	data not available	data not available
Les.3358.1.S1_a_at:ProbePair2	PM	data not available	data not available	data not available
Les.3358.1.S1_a_at:ProbePair3	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	2011.05	2011.05	517.18	0.26
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	710.21	689.73	124.75	0.18
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	296.25	327.33	110.75	0.37
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	665.55	665.55	540.52	0.81
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	2458.61	2558.70	297.33	0.12
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	2671.62	3197.42	1374.44	0.51
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	2214.52	2240.83	83.37	0.04
	Gene expression data from Aft red fruit peel	exocarp	3	3	756.01	787.38	144.96	0.19
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1702.11	1642.60	108.50	0.06
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	191.74	195.77	40.52	0.21
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	4996.18	4218.22	1401.78	0.28
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	822.64	822.64	790.30	0.96
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	2431.06	2646.74	447.24	0.18
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1247.42	1247.42	1062.29	0.85
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	5411.70	6656.60	3007.68	0.56
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1890.08	1890.08	517.85	0.27
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1144.35	1144.35	135.80	0.12
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	492.65	515.92	51.29	0.10
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	641.15	659.93	214.19	0.33
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	888.54	855.98	63.46	0.07
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	716.06	698.58	162.96	0.23
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	3068.92	3246.16	1287.65	0.42
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	1208.20	1208.20	1274.54	1.05
	Gene expression data from Micro-Tom root	root	3	3	1265.74	1228.69	163.43	0.13

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	2376.75	2e-4	P
	GSM480171 extract 1	1645.35	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	843.939	2e-4	P
	GSM480212 extract 1	596.977	2e-4	P
	GSM480213 extract 1	689.726	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	327.326	2e-4	P
	GSM480217 extract 1	388.143	2e-4	P
	GSM480215 extract 1	173.283	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1047.75	2e-4	P
	GSM480186 extract 1	283.345	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	2124.15	2e-4	P
	GSM480188 extract 1	2558.7	2e-4	P
	GSM480189 extract 1	2692.99	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	3207.93	2e-4	P
	GSM480225 extract 1	3655.99	2e-4	P
	GSM480226 extract 1	3186.91	2e-4	P
	GSM480227 extract 1	635.664	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	2240.83	2e-4	P
	GSM480208 extract 1	2121.17	2e-4	P
	GSM480207 extract 1	2281.57	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	882.722	2e-4	P
	GSM480210 extract 1	597.929	2e-4	P
	GSM480211 extract 1	787.38	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	1827.35	2e-4	P
	GSM480220 extract 1	1636.39	2e-4	P
	GSM480218 extract 1	1642.6	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	230.101	2e-4	P
	GSM480221 extract 1	149.362	2e-4	P
	GSM480223 extract 1	195.77	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	6614.41	2e-4	P
	GSM480192 extract 1	4218.22	2e-4	P
	GSM480191 extract 1	4155.9	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	1381.47	2e-4	P
	GSM480196 extract 1	263.813	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	1916.85	2e-4	P
	GSM480199 extract 1	2646.74	2e-4	P
	GSM480198 extract 1	2729.6	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	1998.57	2e-4	P
	GSM480194 extract 1	496.264	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	7402.49	2e-4	P
	GSM480231 extract 1	931.127	2e-4	P
	GSM480229 extract 1	6666	2e-4	P
	GSM480230 extract 1	6647.19	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	2256.26	2e-4	P
	GSM480169 extract 1	1523.91	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	1240.38	2e-4	P
	GSM480172 extract 1	1048.33	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	433.851	2e-4	P
	GSM480175 extract 1	528.187	2e-4	P
	GSM480176 extract 1	515.92	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	845.328	2e-4	P
	GSM480179 extract 1	418.18	2e-4	P
	GSM480178 extract 1	659.933	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	855.982	2e-4	P
	GSM480200 extract 1	961.668	2e-4	P
	GSM480202 extract 1	847.959	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	562.546	2e-4	P
	GSM480203 extract 1	887.054	2e-4	P
	GSM480205 extract 1	698.575	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	4258.77	2e-4	P
	GSM480181 extract 1	1701.83	2e-4	P
	GSM480182 extract 1	3246.16	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	2109.44	2e-4	P
	GSM480184 extract 1	306.963	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	1444.52	2e-4	P
	GSM480167 extract 1	1124.02	2e-4	P
	GSM480166 extract 1	1228.69	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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