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Expression Template: Les.2555.1.S1_at

Template Basic Information

Template name:	Les.2555.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U585239
External db links:	GenBank: BI207489

Annotations for unigene SGN-U585239 (manual: 1 | blast: 2 | go: 0 )

Manual annotations

Based on clone cLEM-8-D17, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: elastin Annotation Keywords: cell structure; structural protein; extracellular matrix

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|118482785\|gb\|ABK93310.1\|	149	5e-34	38.66	903 bp (63.8%)	3
Description:	unknown [Populus trichocarpa]
arabidopsis	blastx	At1G61730.1	99.8	4e-21	29.73	846 bp (59.7%)	3
Description:	DNA-binding storekeeper protein-related \| chr1:22797112-22798242 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.2555.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.2555.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.2555.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.2555.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.2555.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.2555.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.2555.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.2555.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.2555.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.2555.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.2555.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	479.63	479.63	56.93	0.12
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	549.72	555.50	44.00	0.08
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	557.42	557.89	45.79	0.08
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	668.07	677.83	57.23	0.09
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	596.28	596.28	6.12	0.01
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	539.60	538.28	14.25	0.03
	Gene expression data from Aft red fruit peel	exocarp	3	3	587.55	588.78	14.50	0.02
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	540.77	533.34	75.77	0.14
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	577.18	585.44	15.69	0.03
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	616.79	695.27	140.39	0.23
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	515.06	515.06	154.78	0.30
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	666.05	659.31	52.07	0.08
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	365.24	365.24	67.20	0.18
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	358.94	308.78	132.61	0.37
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	572.66	572.66	7.86	0.01
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	375.22	375.22	0.61	0.00
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	442.62	414.60	63.33	0.14
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	590.53	569.38	104.20	0.18
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	551.77	540.53	33.54	0.06
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	799.44	807.42	45.79	0.06
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	643.83	640.95	119.41	0.19
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	450.54	450.54	84.25	0.19
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	462.56	447.21	103.44	0.22
	Gene expression data from Micro-Tom root	root	3	3	602.82	604.22	22.48	0.04

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	519.881	2e-4	P
	GSM480171 extract 1	439.375	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	503.115	2e-4	P
	GSM480201 extract 1	590.536	2e-4	P
	GSM480202 extract 1	555.5	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	511.398	2e-4	P
	GSM480212 extract 1	602.967	2e-4	P
	GSM480214 extract 1	557.892	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	677.834	2e-4	P
	GSM480181 extract 1	719.79	2e-4	P
	GSM480182 extract 1	606.577	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	600.607	2e-4	P
	GSM480186 extract 1	591.949	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	554.467	2e-4	P
	GSM480206 extract 1	526.068	2e-4	P
	GSM480208 extract 1	538.28	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	588.783	2e-4	P
	GSM480210 extract 1	601.394	2e-4	P
	GSM480211 extract 1	572.48	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	468.986	2e-4	P
	GSM480218 extract 1	533.344	2e-4	P
	GSM480220 extract 1	619.971	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	559.088	2e-4	P
	GSM480222 extract 1	587.005	2e-4	P
	GSM480223 extract 1	585.442	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	454.701	2e-4	P
	GSM480191 extract 1	695.268	2e-4	P
	GSM480192 extract 1	700.394	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	405.619	2e-4	P
	GSM480196 extract 1	624.51	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	617.675	2e-4	P
	GSM480199 extract 1	721.161	2e-4	P
	GSM480198 extract 1	659.313	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	412.756	2e-4	P
	GSM480193 extract 1	317.718	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	264.306	2e-4	P
	GSM480228 extract 1	328.397	2e-4	P
	GSM480230 extract 1	289.165	2e-4	P
	GSM480231 extract 1	553.88	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	578.22	2e-4	P
	GSM480169 extract 1	567.101	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	375.644	2e-4	P
	GSM480173 extract 1	374.785	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	398.126	2e-4	P
	GSM480174 extract 1	414.602	2e-4	P
	GSM480176 extract 1	515.129	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	703.678	2e-4	P
	GSM480177 extract 1	569.385	2e-4	P
	GSM480179 extract 1	498.53	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	540.528	2e-4	P
	GSM480204 extract 1	525.299	2e-4	P
	GSM480205 extract 1	589.493	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	840.715	2e-4	P
	GSM480215 extract 1	807.425	2e-4	P
	GSM480216 extract 1	750.188	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	525.893	2e-4	P
	GSM480187 extract 1	764.658	2e-4	P
	GSM480189 extract 1	640.948	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	390.963	2e-4	P
	GSM480184 extract 1	510.11	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	454.763	2e-4	P
	GSM480225 extract 1	353.318	2e-4	P
	GSM480224 extract 1	439.653	2e-4	P
	GSM480227 extract 1	602.49	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	579.67	2e-4	P
	GSM480166 extract 1	624.573	2e-4	P
	GSM480167 extract 1	604.215	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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