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Expression Template: Les.2090.1.S1_at

Template Basic Information

Template name:	Les.2090.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U564796
External db links:	GenBank: AW041752

Annotations for unigene SGN-U564796 (manual: 0 | blast: 3 | go: 4 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15226561\|ref\|NP_179159.1\|	172	2e-41	64.52	366 bp (41.4%)	3
Description:	thioredoxin M-type 3, chloroplast (TRX-M3) [Arabidopsis thaliana] >gi18206255\|sp\|Q9SEU7.2\|TRXM3&hellip
arabidopsis	blastx	At2G15570.1	172	2e-43	64.52	366 bp (41.4%)	3
Description:	Symbols: ATM3, ATHM3 \| ATHM3 (Arabidopsis thioredoxin M-type 3); thiol-disulfide exchange inte&hellip
swissprot	blastx	Q9SEU7	172	2e-42	64.52	366 bp (41.4%)	3
Description:	Thioredoxin M-type 3, chloroplastic OS=Arabidopsis thaliana GN=At2g15570 PE=2 SV=2

GO Terms Annotations

GO:0005489electron transporter activity
GO:0009055electron carrier activity
GO:0015035protein disulfide oxidoreductase activity
GO:0006118electron transport

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.2090.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.2090.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.2090.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.2090.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.2090.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.2090.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.2090.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.2090.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.2090.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.2090.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.2090.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	144.00	144.00	54.47	0.38
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	239.86	243.15	44.09	0.18
	Gene expression data from Aft red fruit flesh	endocarp	3	3	294.67	309.64	29.95	0.10
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	117.14	117.78	11.15	0.10
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	232.64	218.77	57.59	0.25
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	199.04	199.04	28.66	0.14
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	192.10	192.10	9.92	0.05
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	129.36	75.90	108.48	0.84
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	176.49	171.37	22.26	0.13
	Gene expression data from Aft red fruit peel	exocarp	3	3	215.62	212.18	13.25	0.06
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	139.29	143.19	11.65	0.08
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	61.91	62.64	8.81	0.14
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	135.95	133.49	25.85	0.19
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	172.50	172.50	81.73	0.47
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	92.71	99.63	15.39	0.17
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	68.62	68.62	10.58	0.15
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	97.47	64.41	79.39	0.81
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	74.60	74.60	27.99	0.38
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	120.00	120.00	6.46	0.05
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	204.38	206.17	13.94	0.07
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	199.31	199.85	5.95	0.03
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	175.65	169.10	26.99	0.15
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	97.03	101.86	12.45	0.13
	Gene expression data from Micro-Tom root	root	3	3	153.99	156.41	4.27	0.03

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	105.485	7e-4	P
	GSM480171 extract 1	182.524	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	194.221	7e-4	P
	GSM480200 extract 1	282.21	7e-4	P
	GSM480201 extract 1	243.149	7e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	260.191	7e-4	P
	GSM480204 extract 1	309.636	7e-4	P
	GSM480205 extract 1	314.186	7e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	127.96	2e-4	P
	GSM480216 extract 1	117.775	2e-4	P
	GSM480217 extract 1	105.69	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	218.767	2e-4	P
	GSM480181 extract 1	183.257	2e-4	P
	GSM480182 extract 1	295.907	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	178.773	2e-4	P
	GSM480186 extract 1	219.308	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	199.115	2e-4	P
	GSM480183 extract 1	185.089	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	73.5796	2e-4	P
	GSM480226 extract 1	77.0949	2e-4	P
	GSM480224 extract 1	74.7074	2e-4	P
	GSM480227 extract 1	292.076	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	200.869	7e-4	P
	GSM480207 extract 1	157.237	7e-4	P
	GSM480206 extract 1	171.37	7e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	204.427	7e-4	P
	GSM480210 extract 1	230.247	7e-4	P
	GSM480211 extract 1	212.178	0.001	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	148.485	2e-4	P
	GSM480219 extract 1	126.186	2e-4	P
	GSM480220 extract 1	143.194	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	52.7618	2e-4	P
	GSM480222 extract 1	70.3279	0.001	P
	GSM480223 extract 1	62.636	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	133.49	2e-4	P
	GSM480190 extract 1	111.414	2e-4	P
	GSM480192 extract 1	162.944	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	114.711	2e-4	P
	GSM480196 extract 1	230.289	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	75.078	2e-4	P
	GSM480198 extract 1	99.6336	2e-4	P
	GSM480199 extract 1	103.429	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	61.1353	2e-4	P
	GSM480194 extract 1	76.0985	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	54.9377	2e-4	P
	GSM480230 extract 1	73.8856	2e-4	P
	GSM480229 extract 1	45.8013	0.001	P
	GSM480231 extract 1	215.261	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	94.3956	2e-4	P
	GSM480168 extract 1	54.8141	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	124.57	2e-4	P
	GSM480172 extract 1	115.432	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	189.634	2e-4	P
	GSM480175 extract 1	206.171	2e-4	P
	GSM480176 extract 1	217.344	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	193.118	2e-4	P
	GSM480177 extract 1	204.973	2e-4	P
	GSM480179 extract 1	199.851	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	205.315	2e-4	P
	GSM480213 extract 1	152.544	2e-4	P
	GSM480214 extract 1	169.104	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	101.864	2e-4	P
	GSM480189 extract 1	106.343	2e-4	P
	GSM480187 extract 1	82.8927	7e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	156.5	2e-4	P
	GSM480166 extract 1	149.055	2e-4	P
	GSM480167 extract 1	156.406	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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