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Expression Template: LesAffx.21457.1.S1_at

Template Basic Information

Template name:	LesAffx.21457.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U591154
External db links:	GenBank: BI933874

Annotations for unigene SGN-U591154 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147858131\|emb\|CAN83933.1\|	234	6e-60	80.13	468 bp (59.6%)	1
Description:	hypothetical
arabidopsis	blastx	At5G67590.1	187	5e-48	74.24	390 bp (49.7%)	1
Description:	Symbols: FRO1 \| FRO1 (FROSTBITE1) \| chr5:26975299-26976582 FORWARD
swissprot	blastx	Q5XIF3	92.4	2e-18	47.27	327 bp (41.7%)	1
Description:	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Rattus norvegicus GN=Nd&hellip

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.21457.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.21457.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.21457.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.21457.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.21457.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.21457.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.21457.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.21457.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.21457.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.21457.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.21457.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	1469.18	1469.18	62.64	0.04
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	2505.90	2475.87	77.08	0.03
	Gene expression data from Aft red fruit flesh	endocarp	3	3	3150.93	3179.58	52.10	0.02
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	2041.92	2082.84	131.44	0.06
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	1800.84	1930.55	327.79	0.18
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	2937.13	2937.13	1343.39	0.46
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	2437.12	2549.61	469.02	0.19
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	2903.76	2903.76	787.00	0.27
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	2256.06	2200.42	98.13	0.04
	Gene expression data from Aft red fruit peel	exocarp	3	3	2439.10	2454.30	119.18	0.05
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	2377.01	2341.79	74.58	0.03
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	2055.26	2083.65	50.04	0.02
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1655.64	1651.07	144.19	0.09
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	3199.91	3199.91	716.31	0.22
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	2326.68	2473.73	393.50	0.17
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	3365.53	3365.53	198.91	0.06
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	2497.23	2499.12	216.32	0.09
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1960.14	1960.14	409.34	0.21
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1738.91	1738.91	88.79	0.05
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1584.46	1580.91	27.02	0.02
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1422.69	1409.07	33.72	0.02
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	2496.08	2467.28	50.83	0.02
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	2151.90	2108.54	456.86	0.21
	Gene expression data from Micro-Tom root	root	3	3	1796.21	1770.61	180.78	0.10

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	1513.47	2e-4	P
	GSM480170 extract 1	1424.89	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	2593.47	2e-4	P
	GSM480201 extract 1	2475.87	2e-4	P
	GSM480202 extract 1	2448.36	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	3090.8	2e-4	P
	GSM480203 extract 1	3182.42	2e-4	P
	GSM480204 extract 1	3179.58	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	2082.84	2e-4	P
	GSM480216 extract 1	2148.03	2e-4	P
	GSM480217 extract 1	1894.88	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	2043.93	2e-4	P
	GSM480180 extract 1	1428.05	2e-4	P
	GSM480181 extract 1	1930.55	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1987.21	2e-4	P
	GSM480186 extract 1	3887.05	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	2839.67	2e-4	P
	GSM480187 extract 1	1922.08	2e-4	P
	GSM480189 extract 1	2549.61	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	2347.27	2e-4	P
	GSM480184 extract 1	3460.25	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	2198.4	2e-4	P
	GSM480207 extract 1	2200.42	2e-4	P
	GSM480208 extract 1	2369.37	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	2313.05	2e-4	P
	GSM480209 extract 1	2549.95	2e-4	P
	GSM480211 extract 1	2454.3	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	2341.79	2e-4	P
	GSM480219 extract 1	2462.68	2e-4	P
	GSM480220 extract 1	2326.57	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	2084.65	2e-4	P
	GSM480222 extract 1	1997.48	2e-4	P
	GSM480223 extract 1	2083.65	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	1802.06	2e-4	P
	GSM480190 extract 1	1651.07	2e-4	P
	GSM480192 extract 1	1513.78	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	2693.4	2e-4	P
	GSM480196 extract 1	3706.42	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	1880.84	2e-4	P
	GSM480198 extract 1	2625.48	2e-4	P
	GSM480199 extract 1	2473.73	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	3506.18	2e-4	P
	GSM480193 extract 1	3224.88	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	2477.81	2e-4	P
	GSM480228 extract 1	2520.44	2e-4	P
	GSM480229 extract 1	2231.27	2e-4	P
	GSM480231 extract 1	2759.39	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	1670.69	2e-4	P
	GSM480169 extract 1	2249.58	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	1801.69	2e-4	P
	GSM480172 extract 1	1676.12	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	1613.07	2e-4	P
	GSM480175 extract 1	1580.91	2e-4	P
	GSM480176 extract 1	1559.39	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	1397.92	2e-4	P
	GSM480178 extract 1	1409.07	2e-4	P
	GSM480179 extract 1	1461.09	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	2466.2	2e-4	P
	GSM480212 extract 1	2554.77	2e-4	P
	GSM480214 extract 1	2467.28	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	1641.06	2e-4	P
	GSM480224 extract 1	2061.68	2e-4	P
	GSM480226 extract 1	2155.41	2e-4	P
	GSM480227 extract 1	2749.45	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	1988.42	2e-4	P
	GSM480165 extract 1	1629.59	2e-4	P
	GSM480166 extract 1	1770.61	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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