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Expression Template: LesAffx.70067.1.S1_at

Template Basic Information

Template name:	LesAffx.70067.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U574910
External db links:	GenBank: BM410002

Annotations for unigene SGN-U574910 (manual: 1 | blast: 2 | go: 0 )

Manual annotations

Based on clone cLES-17-H9, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: ribosomal protein Annotation Keywords: protein biosynthesis; ribosome complex

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147845835\|emb\|CAN82190.1\|	166	2e-39	57.53	534 bp (64.7%)	3
Description:	hypothetical protein [Vitis vinifera]
arabidopsis	blastx	At3G27160.1	132	3e-31	65.29	354 bp (42.9%)	3
Description:	Symbols: GHS1 \| GHS1 (GLUCOSE HYPERSENSITIVE 1); structural constituent of ribosome \| chr3:100&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.70067.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.70067.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.70067.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.70067.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.70067.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.70067.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.70067.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.70067.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.70067.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.70067.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.70067.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	2271.71	2271.71	816.29	0.36
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	294.01	294.01	28.87	0.10
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	357.40	357.40	40.44	0.11
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	307.24	245.03	176.87	0.58
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	413.47	431.89	40.74	0.10
	Gene expression data from Aft red fruit peel	exocarp	3	3	427.60	435.71	26.58	0.06
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	661.61	667.04	58.57	0.09
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	416.19	423.03	19.00	0.05
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	213.34	229.91	69.14	0.32
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	407.91	407.91	80.05	0.20
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	180.35	180.61	37.91	0.21
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	275.77	275.77	23.22	0.08
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	363.35	277.42	174.49	0.48
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	826.12	826.12	169.06	0.20
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1676.82	1676.82	25.43	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1883.06	1981.01	266.26	0.14
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1488.07	1460.63	110.97	0.07
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	356.85	351.26	35.84	0.10
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	509.33	521.05	36.05	0.07
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	687.21	678.87	19.81	0.03
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	421.95	424.26	14.53	0.03
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	316.74	314.80	30.59	0.10
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	147.21	138.72	14.73	0.10
	Gene expression data from Micro-Tom root	root	3	3	132.70	129.67	7.68	0.06

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	2848.91	2e-4	P
	GSM480170 extract 1	1694.5	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	314.424	2e-4	P
	GSM480185 extract 1	273.6	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	328.802	2e-4	P
	GSM480183 extract 1	385.998	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480227 extract 1	567.341	2e-4	P
	GSM480224 extract 1	250.095	2e-4	P
	GSM480226 extract 1	239.965	2e-4	P
	GSM480225 extract 1	171.568	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	431.89	2e-4	P
	GSM480206 extract 1	366.766	2e-4	P
	GSM480208 extract 1	441.748	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	449.178	2e-4	P
	GSM480210 extract 1	397.901	2e-4	P
	GSM480211 extract 1	435.71	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	717.277	2e-4	P
	GSM480218 extract 1	667.038	2e-4	P
	GSM480220 extract 1	600.518	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	430.833	2e-4	P
	GSM480222 extract 1	423.027	2e-4	P
	GSM480221 extract 1	394.715	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	272.686	2e-4	P
	GSM480190 extract 1	137.422	2e-4	P
	GSM480192 extract 1	229.912	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	351.311	2e-4	P
	GSM480196 extract 1	464.513	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	142.319	2e-4	P
	GSM480199 extract 1	218.135	2e-4	P
	GSM480198 extract 1	180.608	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	292.193	2e-4	P
	GSM480194 extract 1	259.355	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	273.497	2e-4	P
	GSM480229 extract 1	276.432	2e-4	P
	GSM480231 extract 1	625.068	2e-4	P
	GSM480230 extract 1	278.403	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	945.657	2e-4	P
	GSM480168 extract 1	706.575	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1658.84	2e-4	P
	GSM480173 extract 1	1694.81	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	1581.7	2e-4	P
	GSM480174 extract 1	1981.01	2e-4	P
	GSM480175 extract 1	2086.46	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	1393.39	2e-4	P
	GSM480179 extract 1	1610.19	2e-4	P
	GSM480178 extract 1	1460.63	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	395.158	2e-4	P
	GSM480202 extract 1	324.125	2e-4	P
	GSM480201 extract 1	351.26	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	538.063	2e-4	P
	GSM480203 extract 1	468.883	2e-4	P
	GSM480204 extract 1	521.049	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	672.941	2e-4	P
	GSM480213 extract 1	709.829	2e-4	P
	GSM480214 extract 1	678.872	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	424.256	2e-4	P
	GSM480215 extract 1	435.188	2e-4	P
	GSM480217 extract 1	406.395	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	287.159	2e-4	P
	GSM480181 extract 1	348.251	2e-4	P
	GSM480182 extract 1	314.804	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	138.691	2e-4	P
	GSM480188 extract 1	138.715	2e-4	P
	GSM480189 extract 1	164.224	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	129.67	2e-4	P
	GSM480166 extract 1	141.432	7e-4	P
	GSM480167 extract 1	126.987	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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