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Expression Template: LesAffx.38438.1.S1_at

Template Basic Information

Template name:	LesAffx.38438.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U563294
External db links:	GenBank: AI779202

Annotations for unigene SGN-U563294 (manual: 0 | blast: 3 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147794105\|emb\|CAN62361.1\|	401	5e-110	69.07	867 bp (78.8%)	1
Description:	hypothetical
arabidopsis	blastx	At1G12410.1	371	5e-103	70.37	810 bp (73.6%)	1
Description:	Symbols: CLPP2, NCLPP2, CLPR2 \| CLPR2 (Clp protease proteolytic subunit 2); endopeptidase Clp &hellip
swissprot	blastx	Q9XJ36	371	4e-102	70.37	810 bp (73.6%)	1
Description:	ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic OS=Arabidopsis &hellip

GO Terms Annotations

GO:0006508proteolysis and peptidolysis
GO:0008462endopeptidase Clp activity

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.38438.1.S1_at:ProbePair9	PM	data not available	data not available	data not available
LesAffx.38438.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.38438.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.38438.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.38438.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.38438.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.38438.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.38438.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.38438.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.38438.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.38438.1.S1_at:ProbePair8	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	1271.76	1271.76	252.25	0.20
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	568.60	602.73	91.97	0.16
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	680.31	680.31	76.31	0.11
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	690.12	687.17	20.21	0.03
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	762.70	762.70	73.44	0.10
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	583.72	619.06	78.01	0.13
	Gene expression data from Aft red fruit peel	exocarp	3	3	1101.13	1096.55	74.21	0.07
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	752.68	761.52	74.38	0.10
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	888.74	886.97	44.00	0.05
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	260.37	293.32	101.45	0.39
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	883.85	883.85	30.56	0.03
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	608.95	608.31	60.02	0.10
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	499.63	499.63	98.68	0.20
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	708.97	586.84	285.07	0.40
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	479.66	479.66	98.57	0.21
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	716.25	716.25	57.40	0.08
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	994.12	990.58	23.16	0.02
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	870.70	841.92	104.93	0.12
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	450.11	437.81	64.90	0.14
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	1019.97	1035.77	54.63	0.05
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	957.71	945.06	28.93	0.03
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	315.53	350.30	101.28	0.32
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	650.74	489.73	399.65	0.61
	Gene expression data from Micro-Tom root	root	3	3	231.61	219.86	52.78	0.23

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	1093.39	2e-4	P
	GSM480171 extract 1	1450.12	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	464.441	2e-4	P
	GSM480214 extract 1	602.729	2e-4	P
	GSM480213 extract 1	638.614	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	734.272	2e-4	P
	GSM480185 extract 1	626.353	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	671.547	2e-4	P
	GSM480188 extract 1	711.644	2e-4	P
	GSM480189 extract 1	687.166	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	710.768	2e-4	P
	GSM480183 extract 1	814.624	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	619.056	2e-4	P
	GSM480206 extract 1	637.806	2e-4	P
	GSM480207 extract 1	494.295	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	1029.32	2e-4	P
	GSM480211 extract 1	1096.55	2e-4	P
	GSM480209 extract 1	1177.52	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	822.25	2e-4	P
	GSM480218 extract 1	761.522	2e-4	P
	GSM480220 extract 1	674.272	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	845.665	2e-4	P
	GSM480222 extract 1	933.604	2e-4	P
	GSM480223 extract 1	886.966	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	146.533	2e-4	P
	GSM480190 extract 1	293.315	2e-4	P
	GSM480191 extract 1	341.25	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	905.453	2e-4	P
	GSM480195 extract 1	862.239	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	669.286	2e-4	P
	GSM480198 extract 1	549.259	2e-4	P
	GSM480199 extract 1	608.31	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	569.41	2e-4	P
	GSM480194 extract 1	429.858	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	527.717	2e-4	P
	GSM480228 extract 1	583.729	2e-4	P
	GSM480231 extract 1	1134.51	2e-4	P
	GSM480230 extract 1	589.942	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	409.96	2e-4	P
	GSM480169 extract 1	549.357	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	756.841	2e-4	P
	GSM480172 extract 1	675.667	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	1018.84	2e-4	P
	GSM480176 extract 1	972.934	7e-4	P
	GSM480175 extract 1	990.579	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	987.014	7e-4	P
	GSM480177 extract 1	841.925	7e-4	P
	GSM480178 extract 1	783.151	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	392.24	2e-4	P
	GSM480200 extract 1	520.283	2e-4	P
	GSM480201 extract 1	437.806	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	1035.77	2e-4	P
	GSM480204 extract 1	1064.97	2e-4	P
	GSM480205 extract 1	959.184	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	945.057	2e-4	P
	GSM480215 extract 1	990.818	2e-4	P
	GSM480217 extract 1	937.264	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	350.296	2e-4	P
	GSM480182 extract 1	201.448	2e-4	P
	GSM480181 extract 1	394.851	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	487.552	2e-4	P
	GSM480226 extract 1	491.905	2e-4	P
	GSM480225 extract 1	378.478	2e-4	P
	GSM480227 extract 1	1245.02	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	289.283	2e-4	P
	GSM480165 extract 1	185.696	2e-4	P
	GSM480166 extract 1	219.855	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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