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Expression Template: Les.5942.1.S1_a_at

Template Basic Information

Template name:	Les.5942.1.S1_a_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U580278
External db links:	GenBank: BI203913

Annotations for unigene SGN-U580278 (manual: 3 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLES-7-M16, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "ribosomal protein, L11" Annotation Keywords: protein biosynthesis; ribosome complex

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|78191444\|gb\|ABB29943.1\|	334	5e-90	100	543 bp (63.4%)	2
Description:	ribosomal protein L11-like protein [Solanum tuberosum]
arabidopsis	blastx	At5G45775.2	325	2e-89	96.11	540 bp (63.1%)	2
Description:	60S ribosomal protein L11 (RPL11D) \| chr5:18582508-18583723 REVERSE
swissprot	blastx	P42795	325	2e-88	96.11	540 bp (63.1%)	2
Description:	60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (10)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.5942.1.S1_a_at:ProbePair0	PM	data not available	data not available	data not available
Les.5942.1.S1_a_at:ProbePair1	PM	data not available	data not available	data not available
Les.5942.1.S1_a_at:ProbePair2	PM	data not available	data not available	data not available
Les.5942.1.S1_a_at:ProbePair3	PM	data not available	data not available	data not available
Les.5942.1.S1_a_at:ProbePair4	PM	data not available	data not available	data not available
Les.5942.1.S1_a_at:ProbePair5	PM	data not available	data not available	data not available
Les.5942.1.S1_a_at:ProbePair6	PM	data not available	data not available	data not available
Les.5942.1.S1_a_at:ProbePair7	PM	data not available	data not available	data not available
Les.5942.1.S1_a_at:ProbePair8	PM	data not available	data not available	data not available
Les.5942.1.S1_a_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	1068.80	1068.80	207.37	0.19
	Gene expression data from Aft red fruit flesh	endocarp	3	3	1746.77	1769.43	67.80	0.04
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	941.67	961.60	37.88	0.04
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	1106.86	1099.63	21.71	0.02
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	1196.81	1113.26	449.60	0.38
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	921.29	921.29	182.22	0.20
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	1057.80	1082.81	123.54	0.12
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	1010.06	1010.06	198.57	0.20
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1152.98	1154.62	34.04	0.03
	Gene expression data from Aft red fruit peel	exocarp	3	3	1538.75	1515.16	42.07	0.03
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1195.58	1183.56	97.43	0.08
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1219.71	1232.98	29.23	0.02
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1459.47	1421.80	287.34	0.20
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1018.22	1018.22	99.42	0.10
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1341.36	1404.81	149.11	0.11
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	921.12	921.12	57.65	0.06
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	974.33	790.10	447.74	0.46
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1186.39	1186.39	348.47	0.29
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	846.09	846.09	17.44	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1013.51	1009.44	22.12	0.02
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1604.33	1627.88	272.94	0.17
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	920.22	896.35	55.26	0.06
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	938.27	768.65	466.04	0.50
	Gene expression data from Micro-Tom root	root	3	3	1921.88	1896.09	76.22	0.04

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	922.16	5e-4	P
	GSM480171 extract 1	1215.43	5e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	1670.54	5e-4	P
	GSM480203 extract 1	1800.33	5e-4	P
	GSM480205 extract 1	1769.43	5e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	961.595	5e-4	P
	GSM480212 extract 1	897.988	5e-4	P
	GSM480213 extract 1	965.428	5e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	1089.68	5e-4	P
	GSM480217 extract 1	1099.63	5e-4	P
	GSM480216 extract 1	1131.26	5e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	1113.26	5e-4	P
	GSM480180 extract 1	794.85	5e-4	P
	GSM480182 extract 1	1682.33	5e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	792.436	5e-4	P
	GSM480186 extract 1	1050.14	5e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	923.669	5e-4	P
	GSM480189 extract 1	1082.81	5e-4	P
	GSM480188 extract 1	1166.92	5e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	869.655	5e-4	P
	GSM480184 extract 1	1150.47	5e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	1186.17	5e-4	P
	GSM480206 extract 1	1118.14	5e-4	P
	GSM480208 extract 1	1154.62	5e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	1515.16	5e-4	P
	GSM480209 extract 1	1513.76	5e-4	P
	GSM480211 extract 1	1587.32	5e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	1104.72	5e-4	P
	GSM480220 extract 1	1183.56	5e-4	P
	GSM480219 extract 1	1298.46	5e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	1239.95	5e-4	P
	GSM480223 extract 1	1232.98	5e-4	P
	GSM480222 extract 1	1186.19	5e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	1763.78	5e-4	P
	GSM480190 extract 1	1192.82	5e-4	P
	GSM480191 extract 1	1421.8	5e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	947.915	5e-4	P
	GSM480196 extract 1	1088.52	5e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	1404.81	5e-4	P
	GSM480197 extract 1	1171.02	5e-4	P
	GSM480199 extract 1	1448.24	5e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	961.878	5e-4	P
	GSM480194 extract 1	880.353	5e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	678.47	5e-4	P
	GSM480228 extract 1	838.298	5e-4	P
	GSM480230 extract 1	741.895	5e-4	P
	GSM480231 extract 1	1638.67	5e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	1432.8	5e-4	P
	GSM480168 extract 1	939.989	5e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	833.76	5e-4	P
	GSM480173 extract 1	858.426	5e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	993.703	5e-4	P
	GSM480175 extract 1	1009.44	5e-4	P
	GSM480176 extract 1	1037.38	5e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	1320.37	5e-4	P
	GSM480178 extract 1	1864.73	5e-4	P
	GSM480179 extract 1	1627.88	5e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	983.402	5e-4	P
	GSM480200 extract 1	880.899	5e-4	P
	GSM480201 extract 1	896.354	5e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	739.811	5e-4	P
	GSM480227 extract 1	1625.01	5e-4	P
	GSM480225 extract 1	590.771	5e-4	P
	GSM480226 extract 1	797.481	5e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	1861.91	5e-4	P
	GSM480165 extract 1	1896.09	5e-4	P
	GSM480167 extract 1	2007.65	5e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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