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Expression Template: LesAffx.1790.1.S1_at

Template Basic Information

Template name:	LesAffx.1790.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U580424
External db links:	GenBank: BI933425

Annotations for unigene SGN-U580424 (manual: 1 | blast: 3 | go: 4 )

Manual annotations

Based on clone cLER-15-F20, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: aquaporin Annotation Keywords: transport; membrane transport; membrane protein; water transport; water movement

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|17940740\|gb\|AAL49749.1\|AF452011_1	545	3e-153	93.36	858 bp (79.4%)	3
Description:	aquaporin-like protein [Petunia x hybrida]
arabidopsis	blastx	At4G00430.1	509	1e-144	86.36	858 bp (79.4%)	3
Description:	Symbols: PIP1E, TMP-C, PIP1;4 \| TMP-C (plasma membrane intrinsic protein 1;4); water channel \|&hellip
swissprot	blastx	Q7XSQ9	514	2e-145	87.8	858 bp (79.4%)	3
Description:	Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3

GO Terms Annotations

GO:0016021integral to membrane
GO:0006810transport
GO:0016020membrane
GO:0005215transporter activity

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.1790.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.1790.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.1790.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.1790.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.1790.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.1790.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.1790.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.1790.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.1790.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.1790.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.1790.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	540.58	540.58	62.72	0.12
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	35.47	30.62	13.62	0.38
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	11.87	11.25	1.30	0.11
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	32.46	28.49	10.27	0.32
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	179.71	164.35	96.22	0.54
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	930.18	901.49	74.99	0.08
	Gene expression data from Aft red fruit peel	exocarp	3	3	1982.16	1981.59	114.68	0.06
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	299.52	335.54	71.94	0.24
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	71.39	69.87	13.91	0.19
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	2093.81	2584.70	1128.53	0.54
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	51.64	51.64	29.65	0.57
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	247.69	247.09	106.39	0.43
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	61.30	61.30	14.87	0.24
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	527.49	537.32	111.77	0.21
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	961.42	961.42	463.47	0.48
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	2017.31	2017.31	178.37	0.09
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	787.00	452.68	581.30	0.74
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	2331.00	2485.67	293.98	0.13
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	111.72	97.27	34.20	0.31
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	27.57	28.15	4.03	0.15
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	418.25	336.15	302.69	0.72
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	20.29	20.29	8.37	0.41
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	45.42	45.42	12.27	0.27
	Gene expression data from Micro-Tom root	root	3	3	1534.48	1635.23	227.72	0.15

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	496.23	2e-4	P
	GSM480171 extract 1	584.93	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	24.9477	0.003	P
	GSM480200 extract 1	30.6156	7e-4	P
	GSM480202 extract 1	50.857	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	13.3656	0.004	P
	GSM480216 extract 1	11.2539	0.112	A
	GSM480217 extract 1	10.9832	0.011	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	24.7697	2e-4	P
	GSM480188 extract 1	44.1244	2e-4	P
	GSM480189 extract 1	28.4879	0.003	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	82.229	2e-4	P
	GSM480225 extract 1	307.922	2e-4	P
	GSM480227 extract 1	138.259	2e-4	P
	GSM480226 extract 1	190.446	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	873.767	2e-4	P
	GSM480207 extract 1	1015.28	2e-4	P
	GSM480208 extract 1	901.494	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	1867.77	2e-4	P
	GSM480209 extract 1	2097.13	2e-4	P
	GSM480211 extract 1	1981.59	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	335.541	2e-4	P
	GSM480220 extract 1	216.693	2e-4	P
	GSM480219 extract 1	346.334	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	58.3123	2e-4	P
	GSM480223 extract 1	86.0028	2e-4	P
	GSM480222 extract 1	69.8678	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	802.976	2e-4	P
	GSM480190 extract 1	2893.76	2e-4	P
	GSM480192 extract 1	2584.7	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	72.6112	2e-4	P
	GSM480196 extract 1	30.6746	0.001	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	354.377	2e-4	P
	GSM480199 extract 1	141.601	2e-4	P
	GSM480198 extract 1	247.086	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	71.8179	2e-4	P
	GSM480194 extract 1	50.7889	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	409.09	2e-4	P
	GSM480228 extract 1	619.545	2e-4	P
	GSM480230 extract 1	626.217	2e-4	P
	GSM480231 extract 1	455.103	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	1289.14	2e-4	P
	GSM480169 extract 1	633.697	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	2143.44	2e-4	P
	GSM480173 extract 1	1891.18	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	450.1	2e-4	P
	GSM480176 extract 1	1458.23	2e-4	P
	GSM480175 extract 1	452.679	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	1991.97	2e-4	P
	GSM480177 extract 1	2485.67	2e-4	P
	GSM480178 extract 1	2515.35	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	150.781	2e-4	P
	GSM480205 extract 1	97.2695	2e-4	P
	GSM480204 extract 1	87.1257	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	28.1538	7e-4	P
	GSM480213 extract 1	23.2809	7e-4	P
	GSM480214 extract 1	31.2731	7e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	336.151	2e-4	P
	GSM480181 extract 1	165.088	2e-4	P
	GSM480182 extract 1	753.524	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	14.3694	0.095	A
	GSM480185 extract 1	26.2024	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	36.7457	2e-4	P
	GSM480183 extract 1	54.0992	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	1694.45	2e-4	P
	GSM480166 extract 1	1635.23	2e-4	P
	GSM480167 extract 1	1273.77	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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