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Expression Template: Les.2512.2.S1_at

Template Basic Information

Template name:	Les.2512.2.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U579170
External db links:	GenBank: CD002771

Annotations for unigene SGN-U579170 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157346281\|emb\|CAO15978.1\|	281	7e-74	80.79	531 bp (57.2%)	3
Description:	unnamed
arabidopsis	blastx	At3G52960.1	252	3e-67	72.67	513 bp (55.2%)	3
Description:	peroxiredoxin type 2, putative \| chr3:19650677-19651381 FORWARD
swissprot	blastx	Q949U7	252	2e-66	72.67	513 bp (55.2%)	3
Description:	Peroxiredoxin-2E, chloroplastic OS=Arabidopsis thaliana GN=PRXIIE PE=1 SV=2

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.2512.2.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.2512.2.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.2512.2.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.2512.2.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.2512.2.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.2512.2.S1_at:ProbePair9	PM	data not available	data not available	data not available
Les.2512.2.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.2512.2.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.2512.2.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.2512.2.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.2512.2.S1_at:ProbePair4	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	797.90	797.90	5.09	0.01
	Gene expression data from Aft red fruit flesh	endocarp	3	3	720.69	734.57	48.98	0.07
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	2239.26	2239.26	799.19	0.36
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	2254.88	2254.88	12.39	0.01
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	231.41	216.71	26.57	0.11
	Gene expression data from Aft red fruit peel	exocarp	3	3	642.02	653.04	21.21	0.03
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	362.17	331.20	54.92	0.15
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	501.77	513.92	33.27	0.07
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	113.82	113.64	75.12	0.66
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	2050.98	2050.98	337.89	0.16
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	321.24	347.02	68.82	0.21
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	2282.39	2282.39	150.71	0.07
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	821.44	645.92	407.38	0.50
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	262.23	262.23	57.11	0.22
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	512.66	512.66	19.77	0.04
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	472.78	493.80	41.26	0.09
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	710.53	706.95	67.10	0.09
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	224.59	209.13	27.70	0.12
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	343.43	282.52	108.02	0.31
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	525.73	518.95	18.95	0.04
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	146.91	144.63	53.85	0.37
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	443.14	496.14	156.76	0.35
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	451.98	262.34	393.54	0.87
	Gene expression data from Micro-Tom root	root	3	3	301.82	314.46	28.71	0.10

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	801.495	2e-4	P
	GSM480171 extract 1	794.299	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	666.262	2e-4	P
	GSM480204 extract 1	761.226	2e-4	P
	GSM480205 extract 1	734.571	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1674.15	2e-4	P
	GSM480186 extract 1	2804.37	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	2263.64	2e-4	P
	GSM480184 extract 1	2246.12	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	215.441	2e-4	P
	GSM480206 extract 1	216.711	2e-4	P
	GSM480208 extract 1	262.082	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	653.035	2e-4	P
	GSM480210 extract 1	617.568	2e-4	P
	GSM480211 extract 1	655.45	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	329.73	2e-4	P
	GSM480219 extract 1	425.579	2e-4	P
	GSM480218 extract 1	331.196	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	464.132	2e-4	P
	GSM480222 extract 1	513.917	2e-4	P
	GSM480221 extract 1	527.256	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	38.7846	2e-4	P
	GSM480191 extract 1	189.027	2e-4	P
	GSM480192 extract 1	113.639	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	2289.9	2e-4	P
	GSM480195 extract 1	1812.05	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	243.251	2e-4	P
	GSM480198 extract 1	347.015	2e-4	P
	GSM480199 extract 1	373.457	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	2388.95	2e-4	P
	GSM480193 extract 1	2175.82	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	1428.23	2e-4	P
	GSM480228 extract 1	565.711	2e-4	P
	GSM480229 extract 1	609.421	2e-4	P
	GSM480230 extract 1	682.415	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	221.849	2e-4	P
	GSM480169 extract 1	302.61	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	498.679	2e-4	P
	GSM480173 extract 1	526.634	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	425.241	2e-4	P
	GSM480175 extract 1	499.295	2e-4	P
	GSM480176 extract 1	493.799	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	645.305	2e-4	P
	GSM480178 extract 1	706.946	2e-4	P
	GSM480179 extract 1	779.352	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	256.577	2e-4	P
	GSM480202 extract 1	209.133	2e-4	P
	GSM480201 extract 1	208.072	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	282.524	2e-4	P
	GSM480213 extract 1	468.153	2e-4	P
	GSM480214 extract 1	279.622	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	547.132	2e-4	P
	GSM480216 extract 1	511.094	2e-4	P
	GSM480217 extract 1	518.952	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	144.626	2e-4	P
	GSM480180 extract 1	94.2322	7e-4	P
	GSM480181 extract 1	201.868	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	566.528	2e-4	P
	GSM480187 extract 1	266.745	2e-4	P
	GSM480189 extract 1	496.141	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	241.137	2e-4	P
	GSM480224 extract 1	262.074	2e-4	P
	GSM480227 extract 1	1042.1	2e-4	P
	GSM480226 extract 1	262.595	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	268.949	2e-4	P
	GSM480167 extract 1	322.038	2e-4	P
	GSM480166 extract 1	314.461	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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