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Expression Template: Les.187.1.S1_at

Template Basic Information

Template name:	Les.187.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U583622
External db links:	GenBank: AW441589

Annotations for unigene SGN-U583622 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEC-32-E6, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: putative protein Annotation Keywords: other; putative protein

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147820324\|emb\|CAN73572.1\|	426	3e-117	63.02	996 bp (65.6%)	3
Description:	hypothetical
arabidopsis	blastx	At3G56680.1	306	3e-83	49.26	987 bp (65.0%)	3
Description:	nucleic acid binding \| chr3:21002516-21004425 FORWARD
swissprot	blastx	Q15032	72.4	6e-12	26.05	633 bp (41.7%)	3
Description:	R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.187.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.187.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.187.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.187.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.187.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.187.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.187.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.187.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.187.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.187.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.187.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	2037.15	2037.15	366.94	0.18
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	1125.22	1125.22	237.66	0.21
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	1156.23	1140.17	33.68	0.03
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	1324.61	1324.61	91.66	0.07
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	2033.35	2010.89	47.30	0.02
	Gene expression data from Aft red fruit peel	exocarp	3	3	1601.99	1566.86	102.38	0.06
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	2332.86	2327.44	69.97	0.03
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1946.24	1966.45	43.27	0.02
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1421.17	1455.38	107.98	0.08
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1509.43	1509.43	76.83	0.05
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1822.57	1760.69	125.64	0.07
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1433.42	1433.42	3.15	0.00
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1082.95	930.82	328.90	0.30
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1904.38	1904.38	221.25	0.12
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1814.22	1814.22	67.47	0.04
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	2024.93	1958.51	120.39	0.06
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1840.13	1790.39	104.18	0.06
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	1984.45	1959.63	79.28	0.04
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	1232.90	1256.17	49.91	0.04
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	1977.10	1952.51	58.66	0.03
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	1428.77	1429.28	6.08	0.00
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	1242.98	1260.87	95.84	0.08
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	706.38	463.12	518.11	0.73
	Gene expression data from Micro-Tom root	root	3	3	1246.49	1237.99	15.89	0.01

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	1777.68	2e-4	P
	GSM480171 extract 1	2296.61	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	957.171	2e-4	P
	GSM480185 extract 1	1293.27	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	1194.94	2e-4	P
	GSM480187 extract 1	1133.59	2e-4	P
	GSM480188 extract 1	1140.17	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	1259.8	2e-4	P
	GSM480183 extract 1	1389.42	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	2010.89	2e-4	P
	GSM480207 extract 1	2087.69	2e-4	P
	GSM480208 extract 1	2001.46	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	1521.81	2e-4	P
	GSM480209 extract 1	1717.31	2e-4	P
	GSM480211 extract 1	1566.86	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	2265.76	2e-4	P
	GSM480218 extract 1	2327.44	2e-4	P
	GSM480219 extract 1	2405.38	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	1896.57	2e-4	P
	GSM480222 extract 1	1975.71	2e-4	P
	GSM480223 extract 1	1966.45	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	1300.23	2e-4	P
	GSM480190 extract 1	1507.91	2e-4	P
	GSM480192 extract 1	1455.38	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	1563.75	2e-4	P
	GSM480195 extract 1	1455.1	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	1967.14	2e-4	P
	GSM480198 extract 1	1739.87	2e-4	P
	GSM480199 extract 1	1760.69	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	1435.64	2e-4	P
	GSM480194 extract 1	1431.19	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	896.133	2e-4	P
	GSM480229 extract 1	897.666	2e-4	P
	GSM480228 extract 1	963.975	2e-4	P
	GSM480231 extract 1	1574.01	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	2060.83	2e-4	P
	GSM480168 extract 1	1747.93	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1766.52	2e-4	P
	GSM480173 extract 1	1861.93	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	2163.9	2e-4	P
	GSM480174 extract 1	1952.39	2e-4	P
	GSM480175 extract 1	1958.51	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	1770.14	2e-4	P
	GSM480177 extract 1	1959.86	2e-4	P
	GSM480179 extract 1	1790.39	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	1920.54	2e-4	P
	GSM480202 extract 1	1959.63	2e-4	P
	GSM480201 extract 1	2073.17	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	1266.93	2e-4	P
	GSM480203 extract 1	1175.6	2e-4	P
	GSM480205 extract 1	1256.17	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	2044.05	2e-4	P
	GSM480213 extract 1	1934.74	2e-4	P
	GSM480214 extract 1	1952.51	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	1434.57	2e-4	P
	GSM480216 extract 1	1429.28	2e-4	P
	GSM480217 extract 1	1422.45	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	1260.87	2e-4	P
	GSM480182 extract 1	1139.46	2e-4	P
	GSM480180 extract 1	1328.61	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	452.572	2e-4	P
	GSM480225 extract 1	416.536	2e-4	P
	GSM480226 extract 1	473.675	2e-4	P
	GSM480227 extract 1	1482.74	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	1237.99	2e-4	P
	GSM480165 extract 1	1264.82	2e-4	P
	GSM480167 extract 1	1236.65	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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