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Expression Template: LesAffx.71577.1.S1_a_at

Template Basic Information

Template name:	LesAffx.71577.1.S1_a_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U580543
External db links:	GenBank: BG713784

Annotations for unigene SGN-U580543 (manual: 2 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLER-1-H7, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "late embryogenesis (Lea) protein, Lea5" Annotation Keywords: other; lea protein; embryogenesis

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|2981167\|gb\|AAC06242.1\|	101	5e-20	61.46	279 bp (37.6%)	3
Description:	late embryogenis abundant protein 5 [Nicotiana tabacum]
arabidopsis	blastx	At4G02380.1	80.9	7e-16	58.33	270 bp (36.4%)	3
Description:	Symbols: ATLEA5, SAG21 \| SAG21 (SENESCENCE-ASSOCIATED GENE 21) \| chr4:1046414-1046807 REVERSE
swissprot	blastx	Q39644	72.8	2e-12	45.26	276 bp (37.2%)	3
Description:	Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.71577.1.S1_a_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.71577.1.S1_a_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.71577.1.S1_a_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.71577.1.S1_a_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.71577.1.S1_a_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.71577.1.S1_a_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.71577.1.S1_a_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.71577.1.S1_a_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.71577.1.S1_a_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.71577.1.S1_a_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.71577.1.S1_a_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	3999.72	3999.72	1012.92	0.25
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	3802.83	3721.02	468.14	0.12
	Gene expression data from Aft red fruit flesh	endocarp	3	3	2969.11	2985.52	262.19	0.09
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	2096.29	1926.58	366.02	0.17
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	1434.02	1479.64	283.24	0.20
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	4771.48	4771.48	147.33	0.03
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	5666.07	5586.17	400.91	0.07
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	5434.81	5434.81	1509.72	0.28
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	4274.99	4213.53	204.85	0.05
	Gene expression data from Aft red fruit peel	exocarp	3	3	4013.99	4088.23	151.98	0.04
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	2343.25	2294.43	162.06	0.07
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1767.00	1604.71	326.51	0.18
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	6387.55	5774.26	1817.76	0.28
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	4475.98	4475.98	1179.23	0.26
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	5348.19	5406.02	1033.51	0.19
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	5770.15	5770.15	1464.96	0.25
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	8565.77	9234.82	1526.55	0.18
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	3296.98	3296.98	823.49	0.25
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	4010.40	4010.40	108.02	0.03
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1185.21	1433.55	612.36	0.52
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	807.87	683.34	703.80	0.87
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	5295.63	5085.19	1125.78	0.21
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	6882.08	7467.64	2030.87	0.30
	Gene expression data from Micro-Tom root	root	3	3	5180.72	5353.94	675.57	0.13

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	4715.96	2e-4	P
	GSM480171 extract 1	3283.48	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	4306.48	2e-4	P
	GSM480200 extract 1	3721.02	2e-4	P
	GSM480201 extract 1	3380.98	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	2699.1	2e-4	P
	GSM480203 extract 1	3222.7	2e-4	P
	GSM480204 extract 1	2985.52	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	1845.94	2e-4	P
	GSM480213 extract 1	2516.36	2e-4	P
	GSM480214 extract 1	1926.58	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	1130.73	2e-4	P
	GSM480216 extract 1	1691.68	2e-4	P
	GSM480217 extract 1	1479.64	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	4875.65	2e-4	P
	GSM480186 extract 1	4667.3	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	5586.17	2e-4	P
	GSM480188 extract 1	5311.13	2e-4	P
	GSM480187 extract 1	6100.92	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	4367.27	2e-4	P
	GSM480183 extract 1	6502.34	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	4107.9	2e-4	P
	GSM480207 extract 1	4503.53	2e-4	P
	GSM480206 extract 1	4213.53	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	4088.23	2e-4	P
	GSM480209 extract 1	3839.16	2e-4	P
	GSM480211 extract 1	4114.59	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	2524.11	2e-4	P
	GSM480218 extract 1	2294.43	2e-4	P
	GSM480220 extract 1	2211.21	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	1553.43	2e-4	P
	GSM480222 extract 1	2142.85	2e-4	P
	GSM480221 extract 1	1604.71	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	8432.63	2e-4	P
	GSM480192 extract 1	5774.26	2e-4	P
	GSM480191 extract 1	4955.77	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	3642.14	2e-4	P
	GSM480195 extract 1	5309.82	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	6351.57	2e-4	P
	GSM480198 extract 1	5406.02	2e-4	P
	GSM480199 extract 1	4286.97	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	4734.27	2e-4	P
	GSM480193 extract 1	6806.04	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	9450.59	2e-4	P
	GSM480229 extract 1	9494.76	2e-4	P
	GSM480231 extract 1	6298.68	2e-4	P
	GSM480230 extract 1	9019.04	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	3879.27	2e-4	P
	GSM480169 extract 1	2714.68	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	3934.02	2e-4	P
	GSM480173 extract 1	4086.78	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	1433.55	2e-4	P
	GSM480175 extract 1	1634.39	2e-4	P
	GSM480176 extract 1	487.693	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	1565.63	2e-4	P
	GSM480178 extract 1	683.335	2e-4	P
	GSM480179 extract 1	174.655	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	6511.78	2e-4	P
	GSM480182 extract 1	5085.19	2e-4	P
	GSM480181 extract 1	4289.91	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	8628.44	2e-4	P
	GSM480224 extract 1	7718.69	2e-4	P
	GSM480226 extract 1	7216.59	2e-4	P
	GSM480227 extract 1	3964.6	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	5752.82	2e-4	P
	GSM480167 extract 1	4435.41	2e-4	P
	GSM480166 extract 1	5353.94	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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