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Expression Template: Les.4149.2.S1_a_at

Template Basic Information

Template name:	Les.4149.2.S1_a_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U578921
External db links:	GenBank: BM412443

Annotations for unigene SGN-U578921 (manual: 1 | blast: 2 | go: 0 )

Manual annotations

Based on clone cLEG-30-E24, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: calcium binding protein Annotation Keywords: signal transduction; calcium signaling

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|3550661\|emb\|CAA04670.1\|	199	6e-49	92.59	324 bp (25.2%)	3
Description:	39 kDa EF-Hand containing protein [Solanum tuberosum]
arabidopsis	blastx	At4G38810.2	145	7e-35	67.89	324 bp (25.2%)	3
Description:	calcium-binding EF hand family protein \| chr4:18115601-18118854 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4149.2.S1_a_at:ProbePair0	PM	data not available	data not available	data not available
Les.4149.2.S1_a_at:ProbePair1	PM	data not available	data not available	data not available
Les.4149.2.S1_a_at:ProbePair10	PM	data not available	data not available	data not available
Les.4149.2.S1_a_at:ProbePair2	PM	data not available	data not available	data not available
Les.4149.2.S1_a_at:ProbePair3	PM	data not available	data not available	data not available
Les.4149.2.S1_a_at:ProbePair4	PM	data not available	data not available	data not available
Les.4149.2.S1_a_at:ProbePair5	PM	data not available	data not available	data not available
Les.4149.2.S1_a_at:ProbePair6	PM	data not available	data not available	data not available
Les.4149.2.S1_a_at:ProbePair7	PM	data not available	data not available	data not available
Les.4149.2.S1_a_at:ProbePair8	PM	data not available	data not available	data not available
Les.4149.2.S1_a_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	433.03	433.03	22.62	0.05
	Gene expression data from Aft red fruit flesh	endocarp	3	3	3233.01	3238.29	129.98	0.04
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	2555.36	2556.82	80.54	0.03
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	463.82	459.32	142.29	0.31
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	1482.81	1424.65	119.51	0.08
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	550.52	535.74	65.23	0.12
	Gene expression data from Aft red fruit peel	exocarp	3	3	2937.66	2930.13	96.42	0.03
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	745.46	744.69	111.24	0.15
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	2232.35	2180.91	152.15	0.07
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	739.10	635.98	219.72	0.30
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	3990.83	3990.83	43.42	0.01
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	3037.07	3081.09	105.57	0.03
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	3532.50	3532.50	159.43	0.05
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	3344.35	3389.75	504.97	0.15
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	143.89	143.89	2.05	0.01
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	174.65	174.65	18.77	0.11
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	496.36	563.53	148.44	0.30
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	336.99	336.82	71.86	0.21
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	526.33	564.46	81.37	0.15
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	636.00	583.36	232.19	0.37
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	2111.69	2111.69	10.52	0.00
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	1943.67	1943.67	28.63	0.01
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	2244.82	2233.82	239.90	0.11
	Gene expression data from Micro-Tom root	root	3	3	17.56	18.70	4.32	0.25

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	449.023	2e-4	P
	GSM480171 extract 1	417.031	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	3238.29	2e-4	P
	GSM480204 extract 1	3360.27	2e-4	P
	GSM480205 extract 1	3100.47	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	2556.82	2e-4	P
	GSM480216 extract 1	2474.1	2e-4	P
	GSM480217 extract 1	2635.16	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	608.312	2e-4	P
	GSM480180 extract 1	459.316	2e-4	P
	GSM480182 extract 1	323.841	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	1620.27	2e-4	P
	GSM480188 extract 1	1424.65	2e-4	P
	GSM480189 extract 1	1403.52	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	535.742	2e-4	P
	GSM480207 extract 1	493.955	2e-4	P
	GSM480208 extract 1	621.874	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	2845.22	2e-4	P
	GSM480209 extract 1	3037.62	2e-4	P
	GSM480210 extract 1	2930.13	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	634.61	2e-4	P
	GSM480220 extract 1	744.691	2e-4	P
	GSM480219 extract 1	857.084	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	2403.55	2e-4	P
	GSM480222 extract 1	2180.91	2e-4	P
	GSM480223 extract 1	2112.58	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	635.979	2e-4	P
	GSM480191 extract 1	991.406	2e-4	P
	GSM480192 extract 1	589.901	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	4021.53	2e-4	P
	GSM480196 extract 1	3960.13	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	3113.5	2e-4	P
	GSM480199 extract 1	2916.61	2e-4	P
	GSM480198 extract 1	3081.09	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	3419.76	2e-4	P
	GSM480194 extract 1	3645.23	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	3903.99	2e-4	P
	GSM480229 extract 1	3500.68	2e-4	P
	GSM480230 extract 1	3278.82	2e-4	P
	GSM480231 extract 1	2693.93	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	142.442	2e-4	P
	GSM480169 extract 1	145.335	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	187.926	2e-4	P
	GSM480172 extract 1	161.382	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	599.342	2e-4	P
	GSM480176 extract 1	326.202	2e-4	P
	GSM480175 extract 1	563.533	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	408.94	2e-4	P
	GSM480178 extract 1	336.819	2e-4	P
	GSM480179 extract 1	265.222	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	581.631	2e-4	P
	GSM480200 extract 1	564.46	2e-4	P
	GSM480202 extract 1	432.9	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	889.996	2e-4	P
	GSM480212 extract 1	583.361	2e-4	P
	GSM480214 extract 1	434.648	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	2119.13	2e-4	P
	GSM480186 extract 1	2104.25	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	1963.91	2e-4	P
	GSM480184 extract 1	1923.42	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	2507.11	2e-4	P
	GSM480225 extract 1	2004.54	2e-4	P
	GSM480226 extract 1	2385.3	2e-4	P
	GSM480227 extract 1	2082.35	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	18.6985	0.024	P
	GSM480167 extract 1	21.1967	2e-4	P
	GSM480166 extract 1	12.7929	0.008	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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