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Expression Template: Les.2940.2.S1_at

Template Basic Information

Template name:	Les.2940.2.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U579015
External db links:	GenBank: BE353704

Annotations for unigene SGN-U579015 (manual: 5 | blast: 3 | go: 3 )

Manual annotations

Based on clone cTOA-12-L8, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "RNA-binding protein, polyA-binding protein" Annotation Keywords: other; nucleic acid binding; RNA binding; polyA binding

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|7673355\|gb\|AAF66823.1\|AF190655_1	961		92.6	1929 bp (70.7%)	1
Description:	poly(A)-binding protein [Nicotiana tabacum]
arabidopsis	blastx	At1G49760.1	596	3e-170	73.56	1305 bp (47.8%)	1
Description:	Symbols: PAB8 \| PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor &hellip
swissprot	blastx	P42731	612	3e-174	71.74	1335 bp (48.9%)	1
Description:	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1

GO Terms Annotations

GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.2940.2.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.2940.2.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.2940.2.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.2940.2.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.2940.2.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.2940.2.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.2940.2.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.2940.2.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.2940.2.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.2940.2.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.2940.2.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	897.46	897.46	377.80	0.42
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	668.04	612.81	114.28	0.17
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	882.83	882.83	178.79	0.20
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	753.11	780.95	159.48	0.21
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	1033.75	1033.75	138.24	0.13
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	415.57	194.03	491.24	1.18
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	381.85	401.68	35.58	0.09
	Gene expression data from Aft red fruit peel	exocarp	3	3	286.92	279.59	30.86	0.11
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	568.34	549.91	56.42	0.10
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	169.21	183.78	31.16	0.18
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	531.52	598.41	159.51	0.30
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	834.28	834.28	62.53	0.07
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	637.48	635.59	97.94	0.15
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	630.92	630.92	60.50	0.10
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	462.85	313.31	354.07	0.76
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	846.22	846.22	429.74	0.51
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	683.44	683.44	31.37	0.05
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	751.62	721.84	128.76	0.17
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	605.34	622.07	73.07	0.12
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	835.21	819.62	84.16	0.10
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	1023.18	975.95	106.20	0.10
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	564.86	589.24	61.56	0.11
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	578.96	597.37	182.52	0.32
	Gene expression data from Micro-Tom root	root	3	3	376.30	346.80	123.52	0.33

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	630.317	2e-4	P
	GSM480171 extract 1	1164.61	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	612.812	2e-4	P
	GSM480216 extract 1	591.876	2e-4	P
	GSM480217 extract 1	799.447	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	1009.25	2e-4	P
	GSM480185 extract 1	756.405	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	896.839	2e-4	P
	GSM480187 extract 1	581.536	2e-4	P
	GSM480189 extract 1	780.953	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	1131.5	2e-4	P
	GSM480183 extract 1	935.996	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	204.59	2e-4	P
	GSM480225 extract 1	123.594	2e-4	P
	GSM480226 extract 1	183.473	2e-4	P
	GSM480227 extract 1	1150.64	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	340.768	2e-4	P
	GSM480206 extract 1	403.1	2e-4	P
	GSM480208 extract 1	401.676	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	260.378	2e-4	P
	GSM480209 extract 1	320.776	2e-4	P
	GSM480211 extract 1	279.591	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	549.91	2e-4	P
	GSM480219 extract 1	631.673	2e-4	P
	GSM480220 extract 1	523.433	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	183.78	2e-4	P
	GSM480221 extract 1	190.417	2e-4	P
	GSM480223 extract 1	133.441	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	598.41	2e-4	P
	GSM480192 extract 1	349.452	2e-4	P
	GSM480191 extract 1	646.682	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	878.5	2e-4	P
	GSM480196 extract 1	790.067	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	540.499	2e-4	P
	GSM480197 extract 1	736.361	2e-4	P
	GSM480199 extract 1	635.588	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	588.148	2e-4	P
	GSM480193 extract 1	673.703	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	374.744	2e-4	P
	GSM480228 extract 1	251.878	2e-4	P
	GSM480229 extract 1	238.827	2e-4	P
	GSM480231 extract 1	985.961	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	542.343	2e-4	P
	GSM480169 extract 1	1150.09	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	661.261	2e-4	P
	GSM480173 extract 1	705.626	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	640.355	2e-4	P
	GSM480175 extract 1	721.844	2e-4	P
	GSM480176 extract 1	892.667	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	622.068	2e-4	P
	GSM480177 extract 1	525.354	2e-4	P
	GSM480179 extract 1	668.587	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	926.08	2e-4	P
	GSM480201 extract 1	759.946	2e-4	P
	GSM480202 extract 1	819.617	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	1144.8	2e-4	P
	GSM480205 extract 1	948.776	2e-4	P
	GSM480204 extract 1	975.954	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	610.488	2e-4	P
	GSM480212 extract 1	494.844	2e-4	P
	GSM480213 extract 1	589.238	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	751.574	2e-4	P
	GSM480181 extract 1	597.369	2e-4	P
	GSM480182 extract 1	387.93	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	346.803	2e-4	P
	GSM480167 extract 1	511.896	2e-4	P
	GSM480165 extract 1	270.194	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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