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Expression Template: LesAffx.27262.1.S1_a_at

Template Basic Information

Template name:	LesAffx.27262.1.S1_a_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U577569
External db links:	GenBank: BI208433

Annotations for unigene SGN-U577569 (manual: 3 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEC-32-G19, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: protein disulfide isomerase Annotation Keywords: protein biosynthesis; protein modification; protein folding

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|77745442\|gb\|ABB02620.1\|	704		97.21	1077 bp (73.0%)	2
Description:	disulfide-isomerase precursor-like protein [Solanum tuberosum]
arabidopsis	blastx	At2G47470.1	565	3e-161	76.54	1074 bp (72.8%)	2
Description:	Symbols: ATPDIL2-1, UNE5, MEE30 \| ATPDIL2-1/MEE30/UNE5 (PDI-LIKE 2-1, maternal effect embryo a&hellip
swissprot	blastx	O22263	565	3e-160	76.54	1074 bp (72.8%)	2
Description:	Probable protein disulfide-isomerase A6 OS=Arabidopsis thaliana GN=At2g47470 PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.27262.1.S1_a_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.27262.1.S1_a_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.27262.1.S1_a_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.27262.1.S1_a_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.27262.1.S1_a_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.27262.1.S1_a_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.27262.1.S1_a_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.27262.1.S1_a_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.27262.1.S1_a_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.27262.1.S1_a_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.27262.1.S1_a_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	764.76	764.76	93.40	0.12
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	1286.20	1310.45	60.80	0.05
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	2305.67	2330.45	164.70	0.07
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	2429.33	2062.36	1125.59	0.46
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	3457.35	3770.22	557.91	0.16
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	4805.50	4805.50	170.17	0.04
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	2769.72	2762.18	554.32	0.20
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1010.14	1018.65	30.27	0.03
	Gene expression data from Aft red fruit peel	exocarp	3	3	2460.98	2513.07	97.54	0.04
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1022.46	1026.89	76.33	0.07
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1226.43	1210.65	55.79	0.05
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	2744.03	2074.51	1302.10	0.47
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	3488.62	3488.62	1.64	0.00
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	2564.21	2491.76	285.14	0.11
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	4802.63	4802.63	306.63	0.06
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	2740.40	2473.60	727.68	0.27
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1467.06	1467.06	236.64	0.16
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	748.77	748.77	23.59	0.03
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1103.47	1089.45	54.12	0.05
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1022.36	1042.70	56.00	0.05
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	1872.95	2127.08	500.32	0.27
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	3125.05	3159.16	67.23	0.02
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	4386.00	4386.00	1352.08	0.31
	Gene expression data from Micro-Tom root	root	3	3	1643.16	1664.11	262.40	0.16

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	698.715	2e-4	P
	GSM480170 extract 1	830.798	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	1310.45	2e-4	P
	GSM480212 extract 1	1331.13	2e-4	P
	GSM480214 extract 1	1217.02	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	2456.57	2e-4	P
	GSM480216 extract 1	2129.98	2e-4	P
	GSM480217 extract 1	2330.45	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	1533.02	2e-4	P
	GSM480181 extract 1	3692.6	2e-4	P
	GSM480182 extract 1	2062.36	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	2813.22	2e-4	P
	GSM480188 extract 1	3770.22	2e-4	P
	GSM480189 extract 1	3788.61	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	4925.83	2e-4	P
	GSM480183 extract 1	4685.17	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	2683.13	2e-4	P
	GSM480226 extract 1	2841.22	2e-4	P
	GSM480225 extract 1	2103.05	2e-4	P
	GSM480227 extract 1	3451.46	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	976.532	2e-4	P
	GSM480207 extract 1	1018.65	2e-4	P
	GSM480208 extract 1	1035.25	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	2513.07	2e-4	P
	GSM480209 extract 1	2348.45	2e-4	P
	GSM480210 extract 1	2521.41	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	944.006	2e-4	P
	GSM480219 extract 1	1096.47	2e-4	P
	GSM480220 extract 1	1026.89	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	1210.65	2e-4	P
	GSM480223 extract 1	1180.23	2e-4	P
	GSM480222 extract 1	1288.41	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	2074.51	2e-4	P
	GSM480190 extract 1	1912.91	2e-4	P
	GSM480191 extract 1	4244.66	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	3487.46	2e-4	P
	GSM480195 extract 1	3489.78	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	2322.28	2e-4	P
	GSM480199 extract 1	2878.58	2e-4	P
	GSM480198 extract 1	2491.76	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	4585.81	2e-4	P
	GSM480194 extract 1	5019.45	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	3812.31	2e-4	P
	GSM480228 extract 1	2412.78	2e-4	P
	GSM480229 extract 1	2202.07	2e-4	P
	GSM480230 extract 1	2534.43	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	1634.39	2e-4	P
	GSM480169 extract 1	1299.73	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	765.45	2e-4	P
	GSM480172 extract 1	732.085	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	1163.22	2e-4	P
	GSM480174 extract 1	1089.45	2e-4	P
	GSM480176 extract 1	1057.73	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	959.043	2e-4	P
	GSM480178 extract 1	1065.35	2e-4	P
	GSM480179 extract 1	1042.7	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	2127.08	2e-4	P
	GSM480201 extract 1	2195.21	2e-4	P
	GSM480202 extract 1	1296.57	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	3047.6	2e-4	P
	GSM480204 extract 1	3168.38	2e-4	P
	GSM480205 extract 1	3159.16	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	3429.93	2e-4	P
	GSM480186 extract 1	5342.06	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	1370.91	2e-4	P
	GSM480165 extract 1	1894.46	2e-4	P
	GSM480167 extract 1	1664.11	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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