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Expression Template: LesAffx.10596.1.S1_at

Template Basic Information

Template name:	LesAffx.10596.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U579954
External db links:	GenBank: CK715447

Annotations for unigene SGN-U579954 (manual: 2 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEG-26-B12, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: heat shock protein 18 Annotation Keywords: stress responses; temperature stress; heat stress; heat shock protein

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|40646966\|gb\|AAQ19680.1\|	244	6e-63	86.25	480 bp (51.7%)	3
Description:	chloroplast small heat shock protein class I [Capsicum frutescens]
arabidopsis	blastx	At5G59720.1	205	4e-53	69.38	480 bp (51.7%)	3
Description:	HSP18.2 (HEAT SHOCK PROTEIN 18.2) \| chr5:24079858-24080343 FORWARD
swissprot	blastx	P27396	209	2e-53	73.12	480 bp (51.7%)	3
Description:	17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.10596.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.10596.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.10596.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.10596.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.10596.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.10596.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.10596.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.10596.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.10596.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.10596.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.10596.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	32.62	32.62	12.55	0.38
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	79.88	80.11	6.09	0.08
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	37.25	37.25	6.49	0.17
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	69.40	69.40	8.68	0.13
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	510.45	318.14	442.41	0.87
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	46.74	43.29	13.37	0.29
	Gene expression data from Aft red fruit peel	exocarp	3	3	101.26	98.00	5.81	0.06
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	74.63	77.07	19.06	0.26
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	159.06	165.18	20.90	0.13
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	30.53	31.29	2.23	0.07
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	157.81	157.81	67.84	0.43
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	90.29	62.31	59.13	0.65
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	130.11	130.11	7.91	0.06
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	433.74	429.71	41.96	0.10
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	81.10	81.10	9.20	0.11
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	35.13	35.13	12.58	0.36
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	27.54	27.34	4.87	0.18
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	32.07	36.13	7.14	0.22
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	242.14	236.47	31.32	0.13
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	120.06	129.07	16.35	0.14
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	133.96	131.13	18.56	0.14
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	21.84	23.52	4.81	0.22
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	59.69	52.24	21.61	0.36
	Gene expression data from Micro-Tom root	root	3	3	11.85	11.33	1.93	0.16

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	41.499	0.046	P
	GSM480170 extract 1	23.7474	0.112	A
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	85.8545	0.030	P
	GSM480202 extract 1	80.1063	0.030	P
	GSM480200 extract 1	73.6762	0.014	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	32.6601	0.112	A
	GSM480186 extract 1	41.8337	0.068	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	75.532	0.068	A
	GSM480184 extract 1	63.2613	0.046	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	291.276	0.003	P
	GSM480224 extract 1	234.888	0.004	P
	GSM480226 extract 1	345.001	0.002	P
	GSM480227 extract 1	1170.63	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	35.4397	0.046	P
	GSM480206 extract 1	43.2871	0.038	P
	GSM480208 extract 1	61.5051	0.024	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	107.966	0.024	P
	GSM480210 extract 1	97.8128	0.030	P
	GSM480211 extract 1	98.0018	0.024	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	92.344	0.019	P
	GSM480218 extract 1	54.464	0.019	P
	GSM480219 extract 1	77.0722	0.024	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	135.779	0.019	P
	GSM480221 extract 1	165.183	0.014	P
	GSM480222 extract 1	176.219	0.019	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	31.288	0.046	P
	GSM480190 extract 1	32.278	0.081	A
	GSM480191 extract 1	28.0221	0.081	A
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	205.778	0.008	P
	GSM480195 extract 1	109.836	0.024	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	158.215	0.014	P
	GSM480198 extract 1	50.3339	0.038	P
	GSM480199 extract 1	62.3125	0.038	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	124.513	0.024	P
	GSM480194 extract 1	135.702	0.024	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	390.82	0.002	P
	GSM480230 extract 1	449.81	7e-4	P
	GSM480228 extract 1	484.728	0.002	P
	GSM480231 extract 1	409.617	0.001	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	87.6017	0.024	P
	GSM480169 extract 1	74.5961	0.038	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	26.2321	0.068	A
	GSM480173 extract 1	44.0287	0.056	M
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	27.3445	0.112	A
	GSM480174 extract 1	32.5003	0.081	A
	GSM480176 extract 1	22.7671	0.056	M
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	36.2564	0.024	P
	GSM480178 extract 1	23.8339	0.150	A
	GSM480179 extract 1	36.134	0.038	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	214.041	0.008	P
	GSM480203 extract 1	275.91	0.004	P
	GSM480205 extract 1	236.472	0.008	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	129.066	0.030	P
	GSM480212 extract 1	129.927	0.030	P
	GSM480214 extract 1	101.183	0.030	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	116.982	0.019	P
	GSM480215 extract 1	131.131	0.024	P
	GSM480216 extract 1	153.774	0.019	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	25.5967	0.056	M
	GSM480180 extract 1	23.515	0.130	A
	GSM480182 extract 1	16.423	0.195	A
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	84.0329	0.008	P
	GSM480188 extract 1	42.7829	0.056	M
	GSM480189 extract 1	52.2406	0.030	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	13.9888	0.046	P
	GSM480166 extract 1	11.3289	0.219	A
	GSM480167 extract 1	10.2384	0.068	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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