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Expression Template: Les.3761.1.S1_at

Template Basic Information

Template name:	Les.3761.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U578039
External db links:	GenBank: AI771544

Annotations for unigene SGN-U578039 (manual: 4 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLED-19-D11, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "transcription factor, homeobox, leucine zipper, HDZ2" Annotation Keywords: transcription factor; DNA transcription; transcriptional regulation

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157350911\|emb\|CAO41026.1\|	315	9e-84	56.9	837 bp (55.0%)	3
Description:	unnamed
arabidopsis	blastx	At3G01470.1	155	6e-38	39.93	783 bp (51.5%)	3
Description:	Symbols: ATHB1, HD-ZIP-1, HAT5, ATHB-1 \| ATHB-1 (Homeobox-leucine zipper protein HAT5); transc&hellip
swissprot	blastx	Q02283	155	6e-37	39.93	783 bp (51.5%)	3
Description:	Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.3761.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.3761.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.3761.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.3761.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.3761.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.3761.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.3761.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.3761.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.3761.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.3761.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.3761.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	68.97	68.97	6.24	0.09
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	175.13	161.94	27.17	0.16
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	83.30	83.28	25.95	0.31
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	23.03	23.03	5.23	0.23
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	21.94	23.60	6.74	0.31
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	139.58	148.28	25.49	0.18
	Gene expression data from Aft red fruit peel	exocarp	3	3	84.15	86.61	9.77	0.12
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	288.08	291.02	24.54	0.09
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	106.28	108.84	9.99	0.09
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	47.05	48.03	7.07	0.15
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	38.37	38.37	11.29	0.29
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	32.46	26.06	19.55	0.60
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	36.62	36.62	6.81	0.19
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	16.62	12.48	13.38	0.81
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	79.46	79.46	28.68	0.36
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	33.68	33.68	3.22	0.10
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	62.80	57.92	15.35	0.24
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	62.09	61.06	11.86	0.19
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	120.41	105.98	28.52	0.24
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	35.02	34.29	3.75	0.11
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	212.10	207.99	14.55	0.07
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	18.91	14.57	10.29	0.54
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	24.43	24.43	3.15	0.13
	Gene expression data from Micro-Tom root	root	3	3	26.50	26.43	1.66	0.06

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	64.5601	7e-4	P
	GSM480171 extract 1	73.3884	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	206.378	7e-4	P
	GSM480216 extract 1	157.083	2e-4	P
	GSM480217 extract 1	161.939	7e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	57.3556	2e-4	P
	GSM480180 extract 1	109.257	2e-4	P
	GSM480182 extract 1	83.2769	7e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	26.7284	0.056	M
	GSM480186 extract 1	19.3355	7e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	13.2687	0.171	A
	GSM480227 extract 1	27.305	0.003	P
	GSM480225 extract 1	27.2597	0.038	P
	GSM480226 extract 1	19.9421	0.081	A
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	148.279	2e-4	P
	GSM480207 extract 1	159.592	2e-4	P
	GSM480208 extract 1	110.881	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	92.4642	7e-4	P
	GSM480210 extract 1	73.3903	7e-4	P
	GSM480211 extract 1	86.6059	7e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	262.203	2e-4	P
	GSM480220 extract 1	311.022	2e-4	P
	GSM480219 extract 1	291.024	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	108.845	2e-4	P
	GSM480222 extract 1	114.741	2e-4	P
	GSM480223 extract 1	95.2526	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	48.0317	2e-4	P
	GSM480191 extract 1	39.5308	7e-4	P
	GSM480192 extract 1	53.5727	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	30.3872	0.008	P
	GSM480196 extract 1	46.3595	0.019	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	26.0647	0.014	P
	GSM480197 extract 1	54.4071	2e-4	P
	GSM480199 extract 1	16.8981	0.006	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	41.4288	0.006	P
	GSM480194 extract 1	31.8038	0.011	P
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	35.2562	0.008	P
	GSM480228 extract 1	6.26635	0.081	A
	GSM480229 extract 1	17.4108	0.081	A
	GSM480230 extract 1	7.55796	0.399	A
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	99.7442	2e-4	P
	GSM480168 extract 1	59.1844	7e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	31.4082	7e-4	P
	GSM480172 extract 1	35.9559	0.004	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	50.4825	0.001	P
	GSM480174 extract 1	57.9229	0.004	P
	GSM480176 extract 1	79.9901	7e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	61.057	2e-4	P
	GSM480178 extract 1	50.7742	2e-4	P
	GSM480177 extract 1	74.4358	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	153.258	2e-4	P
	GSM480200 extract 1	105.98	2e-4	P
	GSM480201 extract 1	101.983	7e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	39.0795	2e-4	P
	GSM480205 extract 1	31.6802	0.001	P
	GSM480203 extract 1	34.2942	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	228.273	2e-4	P
	GSM480212 extract 1	207.993	2e-4	P
	GSM480213 extract 1	200.048	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	14.5676	0.006	P
	GSM480187 extract 1	30.6642	0.030	P
	GSM480189 extract 1	11.5022	0.130	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	22.2078	0.068	A
	GSM480184 extract 1	26.6589	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	28.1856	0.006	P
	GSM480166 extract 1	24.8755	0.003	P
	GSM480167 extract 1	26.4331	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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