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Expression Template: LesAffx.16925.1.S1_at

Template Basic Information

Template name:	LesAffx.16925.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U567775
External db links:	GenBank: AI772677

Annotations for unigene SGN-U567775 (manual: 0 | blast: 2 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|217075524\|gb\|ACJ86122.1\|	270	2e-70	79.78	531 bp (51.2%)	1
Description:	unknown [Medicago truncatula]
arabidopsis	blastx	At2G21620.1	263	2e-70	74.58	531 bp (51.2%)	1
Description:	Symbols: RD2 \| RD2 (RESPONSIVE TO DESSICATION 2) \| chr2:9255829-9257066 FORWARD
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

GO:0006950response to stress

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.16925.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.16925.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.16925.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.16925.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.16925.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.16925.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.16925.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.16925.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.16925.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.16925.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.16925.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	1416.83	1416.83	1410.79	1.00
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	632.48	622.52	34.75	0.05
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	993.06	992.90	15.21	0.02
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	2874.96	3327.57	806.30	0.28
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	1835.59	1835.59	74.73	0.04
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	1674.64	1674.64	461.11	0.28
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	1919.84	1913.95	161.33	0.08
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	992.10	947.85	80.20	0.08
	Gene expression data from Aft red fruit peel	exocarp	3	3	2028.62	1989.91	99.53	0.05
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	581.41	581.25	41.42	0.07
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	984.22	1012.91	73.36	0.07
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	4707.59	4759.36	1550.25	0.33
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1855.97	1855.97	70.94	0.04
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1827.47	1993.70	343.60	0.19
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1321.55	1321.55	287.45	0.22
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	2466.66	2468.97	458.65	0.19
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1380.88	1380.88	1164.66	0.84
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	584.88	584.88	50.20	0.09
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	380.10	441.25	115.46	0.30
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	293.18	262.93	66.18	0.23
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	1072.08	1097.24	125.71	0.12
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	1451.56	1432.84	54.11	0.04
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	2272.64	2258.38	51.52	0.02
	Gene expression data from Micro-Tom root	root	3	3	583.99	565.74	92.83	0.16

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	2414.41	2e-4	P
	GSM480171 extract 1	419.258	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	603.786	2e-4	P
	GSM480212 extract 1	622.52	2e-4	P
	GSM480213 extract 1	671.121	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	992.904	2e-4	P
	GSM480215 extract 1	1008.34	2e-4	P
	GSM480217 extract 1	977.925	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	1944.04	2e-4	P
	GSM480182 extract 1	3327.57	2e-4	P
	GSM480180 extract 1	3353.27	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1782.75	2e-4	P
	GSM480186 extract 1	1888.44	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	2000.69	2e-4	P
	GSM480184 extract 1	1348.58	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	2025.79	2e-4	P
	GSM480227 extract 1	1802.12	2e-4	P
	GSM480224 extract 1	1763.05	2e-4	P
	GSM480226 extract 1	2088.4	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	943.772	2e-4	P
	GSM480206 extract 1	947.848	2e-4	P
	GSM480208 extract 1	1084.67	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	1954.27	2e-4	P
	GSM480209 extract 1	1989.91	2e-4	P
	GSM480211 extract 1	2141.69	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	581.249	2e-4	P
	GSM480220 extract 1	622.914	2e-4	P
	GSM480219 extract 1	540.075	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	900.846	2e-4	P
	GSM480222 extract 1	1038.89	2e-4	P
	GSM480223 extract 1	1012.91	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	3132.1	2e-4	P
	GSM480190 extract 1	6231.3	2e-4	P
	GSM480192 extract 1	4759.36	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	1805.81	2e-4	P
	GSM480195 extract 1	1906.13	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	1432.37	2e-4	P
	GSM480199 extract 1	1993.7	2e-4	P
	GSM480198 extract 1	2056.35	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	1524.81	2e-4	P
	GSM480194 extract 1	1118.29	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	3012.08	2e-4	P
	GSM480229 extract 1	2593.52	2e-4	P
	GSM480230 extract 1	2344.42	2e-4	P
	GSM480231 extract 1	1916.6	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	2204.42	2e-4	P
	GSM480169 extract 1	557.342	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	549.386	2e-4	P
	GSM480173 extract 1	620.375	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	441.249	2e-4	P
	GSM480175 extract 1	452.136	2e-4	P
	GSM480176 extract 1	246.93	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	369.07	2e-4	P
	GSM480177 extract 1	247.524	2e-4	P
	GSM480179 extract 1	262.932	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	1097.24	2e-4	P
	GSM480200 extract 1	1183.3	2e-4	P
	GSM480202 extract 1	935.691	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	1512.54	2e-4	P
	GSM480204 extract 1	1409.3	2e-4	P
	GSM480205 extract 1	1432.84	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	2329.78	2e-4	P
	GSM480188 extract 1	2229.75	2e-4	P
	GSM480189 extract 1	2258.38	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	684.588	2e-4	P
	GSM480166 extract 1	565.736	2e-4	P
	GSM480167 extract 1	501.648	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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