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Expression Template: LesAffx.56.2.A1_at

Template Basic Information

Template name:	LesAffx.56.2.A1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U581066
External db links:	GenBank: BI923613

Annotations for unigene SGN-U581066 (manual: 1 | blast: 2 | go: 0 )

Manual annotations

Based on clone cLET-11-N21, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: senescence-associated protein Annotation Keywords: senescence

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|1545805\|dbj\|BAA10929.1\|	364	3e-98	85.54	726 bp (25.8%)	-3
Description:	cytochrome P450 like_TBP [Nicotiana tabacum]
arabidopsis	blastx	No significant hits (or none blast was used over this dataset)
swissprot	blastx	Q8TGM7	83.6	6e-15	75	168 bp (6.0%)	-1
Description:	Uncharacterized protein ART2 OS=Saccharomyces cerevisiae GN=ART2 PE=4 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.56.2.A1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.56.2.A1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.56.2.A1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.56.2.A1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.56.2.A1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.56.2.A1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.56.2.A1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.56.2.A1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.56.2.A1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.56.2.A1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.56.2.A1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	433.68	433.68	140.73	0.32
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	1418.26	1400.09	92.60	0.07
	Gene expression data from Aft red fruit flesh	endocarp	3	3	1199.61	1243.12	116.65	0.10
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	1021.04	1010.78	62.35	0.06
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	1134.35	1134.35	122.00	0.11
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	635.61	572.54	116.02	0.18
	Gene expression data from Aft red fruit peel	exocarp	3	3	467.59	454.78	22.33	0.05
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	543.10	649.11	196.08	0.36
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	407.62	439.42	129.43	0.32
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1503.63	1166.04	748.17	0.50
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1274.10	1274.10	154.52	0.12
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1108.39	1021.03	208.68	0.19
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1095.44	1095.44	271.26	0.25
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1229.27	1292.52	249.66	0.20
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	590.52	590.52	20.46	0.03
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	766.79	766.79	86.58	0.11
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1276.97	1249.93	117.94	0.09
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	2391.85	2278.93	261.41	0.11
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	2398.27	2470.07	374.41	0.16
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	1277.29	1086.93	394.84	0.31
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	1312.51	1312.51	520.97	0.40
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	1217.47	1226.58	377.07	0.31
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	965.65	983.14	81.16	0.08
	Gene expression data from Micro-Tom root	root	3	3	222.36	212.77	58.10	0.26

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	533.189	0.001	P
	GSM480171 extract 1	334.172	0.001	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	1400.09	2e-4	P
	GSM480200 extract 1	1336.09	2e-4	P
	GSM480202 extract 1	1518.59	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	1243.12	2e-4	P
	GSM480203 extract 1	1288.25	7e-4	P
	GSM480205 extract 1	1067.45	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	964.463	2e-4	P
	GSM480213 extract 1	1010.78	2e-4	P
	GSM480214 extract 1	1087.89	7e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	1048.08	2e-4	P
	GSM480184 extract 1	1220.62	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	572.542	2e-4	P
	GSM480206 extract 1	564.773	2e-4	P
	GSM480208 extract 1	769.506	7e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	493.381	2e-4	P
	GSM480210 extract 1	454.621	2e-4	P
	GSM480211 extract 1	454.776	7e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	316.841	2e-4	P
	GSM480218 extract 1	649.107	2e-4	P
	GSM480220 extract 1	663.363	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	518.184	2e-4	P
	GSM480222 extract 1	439.419	2e-4	P
	GSM480223 extract 1	265.252	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	983.735	2e-4	P
	GSM480191 extract 1	2361.11	2e-4	P
	GSM480192 extract 1	1166.04	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	1164.84	2e-4	P
	GSM480196 extract 1	1383.37	7e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	1346.55	7e-4	P
	GSM480199 extract 1	1021.03	2e-4	P
	GSM480198 extract 1	957.588	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	1287.25	2e-4	P
	GSM480193 extract 1	903.625	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	1313.05	2e-4	P
	GSM480230 extract 1	1457.7	2e-4	P
	GSM480231 extract 1	874.357	2e-4	P
	GSM480229 extract 1	1271.98	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	604.986	7e-4	P
	GSM480169 extract 1	576.055	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	828.013	2e-4	P
	GSM480173 extract 1	705.571	7e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	1249.93	2e-4	P
	GSM480174 extract 1	1174.9	2e-4	P
	GSM480176 extract 1	1406.09	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	2205.87	7e-4	P
	GSM480178 extract 1	2278.93	7e-4	P
	GSM480179 extract 1	2690.74	7e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	2470.07	2e-4	P
	GSM480216 extract 1	1993.16	2e-4	P
	GSM480217 extract 1	2731.57	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	1731.24	7e-4	P
	GSM480182 extract 1	1013.69	2e-4	P
	GSM480180 extract 1	1086.93	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	1680.89	2e-4	P
	GSM480185 extract 1	944.131	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	835.918	2e-4	P
	GSM480188 extract 1	1589.9	2e-4	P
	GSM480189 extract 1	1226.58	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	1039.48	2e-4	P
	GSM480225 extract 1	856.824	2e-4	P
	GSM480226 extract 1	1013.6	2e-4	P
	GSM480227 extract 1	952.68	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	169.654	2e-4	P
	GSM480167 extract 1	284.654	2e-4	P
	GSM480166 extract 1	212.768	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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