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Expression Template: LesAffx.69489.1.S1_at

Template Basic Information

Template name:	LesAffx.69489.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U572102
External db links:	GenBank: BI931521

Annotations for unigene SGN-U572102 (manual: 2 | blast: 3 | go: 4 )

Manual annotations

Based on clone cLED-19-P22, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: clathrin assembly protein Annotation Keywords: transport; intracellular transport; vesicle formation; vesicle transport; protein transport

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147853756\|emb\|CAN79566.1\|	313	2e-83	95.65	483 bp (54.7%)	1
Description:	hypothetical
arabidopsis	blastx	At4G35410.2	305	3e-83	92.5	480 bp (54.4%)	1
Description:	clathrin adaptor complex small chain family protein \| chr4:16832577-16833801 FORWARD
swissprot	blastx	B0G185	231	4e-60	71.92	438 bp (49.6%)	1
Description:	AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2 PE=3 SV=1

GO Terms Annotations

GO:0006886intracellular protein transport
GO:0030662coated vesicle membrane
GO:0030125clathrin vesicle coat
GO:0006810transport

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.69489.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.69489.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.69489.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.69489.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.69489.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.69489.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.69489.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.69489.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.69489.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.69489.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.69489.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	1583.08	1583.08	137.47	0.09
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	1525.45	1545.45	69.13	0.05
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	1354.05	1366.13	58.57	0.04
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	1937.18	1988.08	249.09	0.13
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	1349.50	1363.33	75.70	0.06
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1635.43	1679.88	87.72	0.05
	Gene expression data from Aft red fruit peel	exocarp	3	3	1684.34	1696.08	122.53	0.07
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1423.20	1397.64	61.10	0.04
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1805.77	1745.21	107.60	0.06
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1881.50	1863.33	102.86	0.05
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1538.87	1538.87	41.24	0.03
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1911.80	1968.21	108.82	0.06
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1718.04	1718.04	191.94	0.11
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1046.09	1013.85	92.30	0.09
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	2354.73	2354.73	50.87	0.02
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1644.53	1644.53	6.51	0.00
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1584.18	1603.45	57.96	0.04
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1523.60	1522.90	40.42	0.03
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	1362.38	1327.46	67.35	0.05
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	1194.06	1205.85	35.31	0.03
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	1959.65	2060.10	263.81	0.13
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	1670.74	1670.74	489.13	0.29
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	1738.43	1738.43	454.37	0.26
	Gene expression data from Micro-Tom root	root	3	3	1994.49	2024.77	115.51	0.06

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	1680.29	2e-4	P
	GSM480170 extract 1	1485.88	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	1582.37	2e-4	P
	GSM480200 extract 1	1448.53	2e-4	P
	GSM480202 extract 1	1545.45	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	1290.38	2e-4	P
	GSM480213 extract 1	1366.13	2e-4	P
	GSM480214 extract 1	1405.64	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	2156.88	2e-4	P
	GSM480187 extract 1	1666.57	2e-4	P
	GSM480189 extract 1	1988.08	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	1389.84	2e-4	P
	GSM480224 extract 1	1336.82	2e-4	P
	GSM480227 extract 1	1249.01	2e-4	P
	GSM480226 extract 1	1422.33	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	1534.38	2e-4	P
	GSM480206 extract 1	1679.88	2e-4	P
	GSM480207 extract 1	1692.03	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	1800.58	2e-4	P
	GSM480209 extract 1	1556.37	2e-4	P
	GSM480210 extract 1	1696.08	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	1379.04	2e-4	P
	GSM480219 extract 1	1492.93	2e-4	P
	GSM480220 extract 1	1397.64	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	1930	2e-4	P
	GSM480221 extract 1	1742.09	2e-4	P
	GSM480222 extract 1	1745.21	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	1992.23	2e-4	P
	GSM480191 extract 1	1788.93	2e-4	P
	GSM480192 extract 1	1863.33	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	1568.03	2e-4	P
	GSM480195 extract 1	1509.71	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	1980.83	7e-4	P
	GSM480197 extract 1	1786.36	2e-4	P
	GSM480198 extract 1	1968.21	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	1582.31	2e-4	P
	GSM480193 extract 1	1853.76	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	975.39	2e-4	P
	GSM480228 extract 1	1024.08	2e-4	P
	GSM480230 extract 1	1181.26	2e-4	P
	GSM480231 extract 1	1003.63	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	2390.7	2e-4	P
	GSM480168 extract 1	2318.76	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	1639.93	2e-4	P
	GSM480172 extract 1	1649.13	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	1519.04	2e-4	P
	GSM480174 extract 1	1603.45	2e-4	P
	GSM480176 extract 1	1630.05	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	1522.9	2e-4	P
	GSM480179 extract 1	1564.36	7e-4	P
	GSM480178 extract 1	1483.53	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	1327.46	2e-4	P
	GSM480203 extract 1	1319.66	2e-4	P
	GSM480205 extract 1	1440.01	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	1154.37	2e-4	P
	GSM480215 extract 1	1221.97	2e-4	P
	GSM480216 extract 1	1205.85	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	2158.47	2e-4	P
	GSM480181 extract 1	2060.1	2e-4	P
	GSM480180 extract 1	1660.37	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1324.88	2e-4	P
	GSM480186 extract 1	2016.61	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	1417.14	2e-4	P
	GSM480184 extract 1	2059.72	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	2091.84	2e-4	P
	GSM480165 extract 1	2024.77	2e-4	P
	GSM480166 extract 1	1866.85	7e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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