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Expression Template: Les.4300.2.S1_at

Template Basic Information

Template name:	Les.4300.2.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U577602
External db links:	GenBank: AW217635

Annotations for unigene SGN-U577602 (manual: 1 | blast: 2 | go: 0 )

Manual annotations

Based on clone cLET-13-I21, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: putative protein Annotation Keywords: other; putative protein

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|1621268\|emb\|CAB02653.1\|	576	2e-162	80.59	1020 bp (67.4%)	2
Description:	gi\|1621268\|emb\|CAB02653.1\| unknown [Ricinus communis]
arabidopsis	blastx	At5G11420.1	539	2e-153	75.29	1020 bp (67.4%)	2
Description:	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25460.1); similar to unknown [Rici&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4300.2.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4300.2.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4300.2.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4300.2.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4300.2.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4300.2.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4300.2.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4300.2.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4300.2.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4300.2.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4300.2.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	3619.94	3619.94	268.16	0.07
	Gene expression data from Aft red fruit flesh	endocarp	3	3	4.89	5.04	4.16	0.85
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	832.00	886.36	368.32	0.44
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	3.65	3.65	0.56	0.15
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	63.82	63.82	51.15	0.80
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	5.11	3.79	4.81	0.94
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	972.56	884.39	187.31	0.19
	Gene expression data from Aft red fruit peel	exocarp	3	3	1.59	1.72	0.86	0.54
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1192.87	1118.49	150.50	0.13
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	0.83	0.79	0.52	0.62
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1184.63	1369.11	511.36	0.43
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	7.64	7.64	7.80	1.02
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1.10	1.25	0.49	0.44
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	22.49	22.49	12.97	0.58
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	6.91	6.85	4.28	0.62
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	5754.35	5754.35	476.10	0.08
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	2174.69	2174.69	126.96	0.06
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	3536.85	3466.24	152.62	0.04
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	4300.34	4315.78	123.14	0.03
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	332.25	347.50	34.93	0.11
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	406.04	354.78	133.82	0.33
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	0.74	0.78	0.38	0.52
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	7.23	2.90	9.63	1.33
	Gene expression data from Micro-Tom root	root	3	3	80.38	72.09	16.42	0.20

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	3809.55	2e-4	P
	GSM480171 extract 1	3430.32	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	0.657037	0.696	A
	GSM480204 extract 1	8.965	0.068	A
	GSM480205 extract 1	5.04174	0.432	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	1170.13	2e-4	P
	GSM480180 extract 1	886.361	2e-4	P
	GSM480181 extract 1	439.525	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	4.05284	0.295	A
	GSM480185 extract 1	3.25678	0.500	A
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	27.652	0.002	P
	GSM480184 extract 1	99.9932	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	0.984191	0.568	A
	GSM480225 extract 1	11.8506	0.150	A
	GSM480226 extract 1	2.44666	0.634	A
	GSM480227 extract 1	5.14207	0.432	A
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	884.392	2e-4	P
	GSM480208 extract 1	845.598	2e-4	P
	GSM480207 extract 1	1187.68	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	2.37779	0.601	A
	GSM480210 extract 1	0.677596	0.634	A
	GSM480211 extract 1	1.72395	0.466	A
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	1094.04	2e-4	P
	GSM480219 extract 1	1366.08	2e-4	P
	GSM480218 extract 1	1118.49	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	0.789293	0.726	A
	GSM480221 extract 1	1.36534	0.829	A
	GSM480223 extract 1	0.335972	0.850	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	1369.11	2e-4	P
	GSM480190 extract 1	1578.15	2e-4	P
	GSM480191 extract 1	606.629	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	2.11939	0.568	A
	GSM480195 extract 1	13.1536	0.150	A
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	1.49408	0.500	A
	GSM480199 extract 1	0.55826	0.658	A
	GSM480198 extract 1	1.24788	0.805	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	31.6643	0.004	P
	GSM480193 extract 1	13.3158	0.038	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	5.08481	0.432	A
	GSM480231 extract 1	2.03776	0.399	A
	GSM480228 extract 1	8.62243	0.014	P
	GSM480229 extract 1	11.9038	0.432	A
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	6091	2e-4	P
	GSM480169 extract 1	5417.69	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	2084.91	2e-4	P
	GSM480173 extract 1	2264.46	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	3432.31	2e-4	P
	GSM480174 extract 1	3711.99	2e-4	P
	GSM480176 extract 1	3466.24	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	4170.21	2e-4	P
	GSM480177 extract 1	4415.03	2e-4	P
	GSM480179 extract 1	4315.78	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	347.501	2e-4	P
	GSM480200 extract 1	292.293	2e-4	P
	GSM480201 extract 1	356.957	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	354.779	2e-4	P
	GSM480212 extract 1	305.425	2e-4	P
	GSM480214 extract 1	557.915	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	0.779085	0.534	A
	GSM480216 extract 1	0.333487	0.805	A
	GSM480217 extract 1	1.09448	0.829	A
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	2.90442	0.304	A
	GSM480187 extract 1	18.264	0.081	A
	GSM480189 extract 1	0.529232	0.850	A
Gene expression data from Micro-Tom root	GSM480166 extract 1	69.7515	2e-4	P
	GSM480165 extract 1	72.0921	7e-4	P
	GSM480167 extract 1	99.296	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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