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Expression Template: Les.2734.2.S1_a_at

Template Basic Information

Template name:	Les.2734.2.S1_a_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U577927
External db links:	GenBank: BI210762

Annotations for unigene SGN-U577927 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLET-1-I12, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "ribosomal protein, L35" Annotation Keywords: protein biosynthesis; ribosome complex

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|78191412\|gb\|ABB29927.1\|	226	1e-57	98.37	369 bp (57.2%)	1
Description:	unknown [Solanum tuberosum]
arabidopsis	blastx	At5G02610.1	214	3e-56	91.06	369 bp (57.2%)	1
Description:	60S ribosomal protein L35 (RPL35D) \| chr5:587609-588545 FORWARD
swissprot	blastx	Q9M5L0	215	1e-55	91.06	369 bp (57.2%)	1
Description:	60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.2734.2.S1_a_at:ProbePair0	PM	data not available	data not available	data not available
Les.2734.2.S1_a_at:ProbePair1	PM	data not available	data not available	data not available
Les.2734.2.S1_a_at:ProbePair10	PM	data not available	data not available	data not available
Les.2734.2.S1_a_at:ProbePair2	PM	data not available	data not available	data not available
Les.2734.2.S1_a_at:ProbePair3	PM	data not available	data not available	data not available
Les.2734.2.S1_a_at:ProbePair4	PM	data not available	data not available	data not available
Les.2734.2.S1_a_at:ProbePair5	PM	data not available	data not available	data not available
Les.2734.2.S1_a_at:ProbePair6	PM	data not available	data not available	data not available
Les.2734.2.S1_a_at:ProbePair7	PM	data not available	data not available	data not available
Les.2734.2.S1_a_at:ProbePair8	PM	data not available	data not available	data not available
Les.2734.2.S1_a_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	2589.84	2589.84	300.44	0.12
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	1536.88	1534.35	31.89	0.02
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	1243.35	1195.82	86.70	0.07
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	2057.16	2057.16	24.98	0.01
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	2114.57	2099.60	148.38	0.07
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	3120.29	3310.52	607.39	0.19
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	2295.56	2273.79	58.56	0.03
	Gene expression data from Aft red fruit peel	exocarp	3	3	2885.75	2909.74	218.85	0.08
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	2170.89	2145.93	74.20	0.03
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1846.16	1908.35	157.04	0.09
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	3521.38	3255.23	875.98	0.25
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	2336.10	2336.10	13.68	0.01
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	2343.51	2403.35	138.61	0.06
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	2520.51	2520.51	232.45	0.09
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	2583.08	2670.44	424.66	0.16
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	2757.04	2757.04	23.15	0.01
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	2077.78	2077.78	0.40	0.00
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	2504.45	2506.97	28.24	0.01
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	2969.76	3126.38	424.67	0.14
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	2705.23	2715.62	99.65	0.04
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	1759.68	1774.53	60.93	0.03
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	2730.44	2366.21	886.23	0.32
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	2302.02	2302.02	224.77	0.10
	Gene expression data from Micro-Tom root	root	3	3	4137.50	4139.46	174.79	0.04

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	2377.4	2e-4	P
	GSM480170 extract 1	2802.29	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	1506.34	2e-4	P
	GSM480202 extract 1	1569.96	2e-4	P
	GSM480201 extract 1	1534.35	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	1190.81	2e-4	P
	GSM480215 extract 1	1343.42	2e-4	P
	GSM480217 extract 1	1195.82	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	2074.82	2e-4	P
	GSM480186 extract 1	2039.5	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	1974.25	2e-4	P
	GSM480187 extract 1	2269.87	2e-4	P
	GSM480188 extract 1	2099.6	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	3081.27	2e-4	P
	GSM480225 extract 1	3539.77	2e-4	P
	GSM480227 extract 1	2275.5	2e-4	P
	GSM480226 extract 1	3584.63	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	2361.88	2e-4	P
	GSM480208 extract 1	2273.79	2e-4	P
	GSM480207 extract 1	2251	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	2655.89	2e-4	P
	GSM480211 extract 1	2909.74	2e-4	P
	GSM480210 extract 1	3091.62	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	2254.35	2e-4	P
	GSM480218 extract 1	2145.93	2e-4	P
	GSM480219 extract 1	2112.39	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	1667.55	2e-4	P
	GSM480222 extract 1	1908.35	2e-4	P
	GSM480223 extract 1	1962.58	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	2809.34	2e-4	P
	GSM480191 extract 1	3255.23	2e-4	P
	GSM480192 extract 1	4499.57	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	2345.78	2e-4	P
	GSM480195 extract 1	2326.43	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	2185.04	2e-4	P
	GSM480199 extract 1	2442.15	2e-4	P
	GSM480198 extract 1	2403.35	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	2356.14	2e-4	P
	GSM480194 extract 1	2684.88	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	2998.43	2e-4	P
	GSM480231 extract 1	1993.03	2e-4	P
	GSM480229 extract 1	2720.76	2e-4	P
	GSM480230 extract 1	2620.11	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	2773.41	2e-4	P
	GSM480169 extract 1	2740.67	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	2077.5	2e-4	P
	GSM480172 extract 1	2078.06	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	2531.35	2e-4	P
	GSM480176 extract 1	2475.04	2e-4	P
	GSM480175 extract 1	2506.97	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	2489.02	2e-4	P
	GSM480178 extract 1	3293.88	2e-4	P
	GSM480179 extract 1	3126.38	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	2600.79	2e-4	P
	GSM480203 extract 1	2715.62	2e-4	P
	GSM480205 extract 1	2799.27	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	1692.7	2e-4	P
	GSM480214 extract 1	1811.81	2e-4	P
	GSM480213 extract 1	1774.53	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	3740.75	2e-4	P
	GSM480180 extract 1	2084.36	2e-4	P
	GSM480181 extract 1	2366.21	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	2460.96	2e-4	P
	GSM480183 extract 1	2143.09	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	4311.3	2e-4	P
	GSM480167 extract 1	4139.46	2e-4	P
	GSM480165 extract 1	3961.74	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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