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Expression Template: Les.2862.2.S1_at

Template Basic Information

Template name:	Les.2862.2.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U567536
External db links:	GenBank: BM535995

Annotations for unigene SGN-U567536 (manual: 1 | blast: 3 | go: 3 )

Manual annotations

Based on clone cLED-4-M5, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: vesicle transport protein Annotation Keywords: transport; intracellular transport; vesicle formation; vesicle transport; protein transport

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|78191464\|gb\|ABB29953.1\|	436	2e-120	100	654 bp (57.7%)	3
Description:	unknown [Solanum tuberosum]
arabidopsis	blastx	At1G11890.1	399	1e-111	89.91	654 bp (57.7%)	3
Description:	Symbols: ATSEC22, SEC22 \| SEC22 (secretion 22); transporter \| chr1:4011508-4012834 FORWARD
swissprot	blastx	Q94AU2	399	1e-110	89.91	654 bp (57.7%)	3
Description:	25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1

GO Terms Annotations

GO:0016192vesicle-mediated transport
GO:0016021integral to membrane
GO:0006810transport

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.2862.2.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.2862.2.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.2862.2.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.2862.2.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.2862.2.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.2862.2.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.2862.2.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.2862.2.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.2862.2.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.2862.2.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.2862.2.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	243.28	243.28	60.23	0.25
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	644.56	640.17	11.17	0.02
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	436.68	431.21	25.40	0.06
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	971.66	937.17	72.68	0.07
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	440.14	445.97	56.62	0.13
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	604.02	604.02	107.43	0.18
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	602.09	608.55	16.81	0.03
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	475.52	472.68	14.52	0.03
	Gene expression data from Aft red fruit peel	exocarp	3	3	673.78	668.24	55.40	0.08
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	444.95	445.34	4.40	0.01
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	613.09	591.40	39.11	0.06
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	421.74	448.93	49.77	0.12
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	560.26	560.26	72.77	0.13
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	652.29	652.34	119.87	0.18
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	518.76	518.76	69.66	0.13
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	485.13	483.33	114.85	0.24
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	260.58	260.58	62.09	0.24
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	151.66	151.66	13.60	0.09
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	170.80	169.03	8.95	0.05
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	218.53	212.22	20.98	0.10
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	726.20	723.83	16.53	0.02
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	587.76	587.76	55.18	0.09
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	456.56	398.03	173.35	0.38
	Gene expression data from Micro-Tom root	root	3	3	478.01	478.21	48.71	0.10

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	200.693	2e-4	P
	GSM480171 extract 1	285.869	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	636.26	2e-4	P
	GSM480202 extract 1	640.168	2e-4	P
	GSM480201 extract 1	657.265	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	464.376	2e-4	P
	GSM480214 extract 1	431.209	2e-4	P
	GSM480212 extract 1	414.471	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	1055.16	2e-4	P
	GSM480215 extract 1	922.652	2e-4	P
	GSM480216 extract 1	937.174	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	380.832	2e-4	P
	GSM480180 extract 1	445.973	2e-4	P
	GSM480181 extract 1	493.616	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	528.059	2e-4	P
	GSM480185 extract 1	679.984	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	608.548	2e-4	P
	GSM480188 extract 1	614.716	2e-4	P
	GSM480189 extract 1	583.002	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	462.634	2e-4	P
	GSM480206 extract 1	491.257	2e-4	P
	GSM480208 extract 1	472.685	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	668.238	2e-4	P
	GSM480210 extract 1	621.35	2e-4	P
	GSM480209 extract 1	731.742	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	445.337	2e-4	P
	GSM480220 extract 1	440.368	2e-4	P
	GSM480219 extract 1	449.141	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	589.635	2e-4	P
	GSM480223 extract 1	591.402	2e-4	P
	GSM480222 extract 1	658.236	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	364.291	2e-4	P
	GSM480190 extract 1	451.989	2e-4	P
	GSM480191 extract 1	448.926	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	611.718	2e-4	P
	GSM480196 extract 1	508.811	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	772.137	2e-4	P
	GSM480198 extract 1	532.391	2e-4	P
	GSM480199 extract 1	652.341	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	568.013	2e-4	P
	GSM480194 extract 1	469.498	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	530.358	2e-4	P
	GSM480229 extract 1	354.399	2e-4	P
	GSM480231 extract 1	619.474	2e-4	P
	GSM480230 extract 1	436.305	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	304.482	2e-4	P
	GSM480168 extract 1	216.674	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	161.272	2e-4	P
	GSM480172 extract 1	142.038	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	180.509	2e-4	P
	GSM480175 extract 1	162.868	2e-4	P
	GSM480176 extract 1	169.031	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	212.218	2e-4	P
	GSM480177 extract 1	201.431	2e-4	P
	GSM480179 extract 1	241.938	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	743.781	2e-4	P
	GSM480203 extract 1	710.985	2e-4	P
	GSM480205 extract 1	723.827	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	626.775	2e-4	P
	GSM480184 extract 1	548.74	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	320.402	2e-4	P
	GSM480224 extract 1	380.182	2e-4	P
	GSM480227 extract 1	709.792	2e-4	P
	GSM480226 extract 1	415.869	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	526.624	2e-4	P
	GSM480165 extract 1	429.209	2e-4	P
	GSM480166 extract 1	478.21	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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