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Expression Template: LesAffx.54522.1.S1_at

Template Basic Information

Template name:	LesAffx.54522.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U582039
External db links:	GenBank: BM411853

Annotations for unigene SGN-U582039 (manual: 3 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEF-41-H23, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "transcription factor, sucrose-responsive element" Annotation Keywords: transcription factor; DNA transcription; transcriptional regulation

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|9954114\|gb\|AAG08960.1\|AF122052_1	425	5e-117	83.91	951 bp (64.3%)	1
Description:	tuber-specific and sucrose-responsive element binding factor [Solanum tuberosum]
arabidopsis	blastx	At2G23290.1	218	1e-56	62.3	519 bp (35.1%)	1
Description:	Symbols: AtMYB70 \| AtMYB70 (myb domain protein 70); DNA binding / transcription factor \| chr2:&hellip
swissprot	blastx	Q9FDW1	205	5e-52	60.47	507 bp (34.3%)	1
Description:	Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.54522.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.54522.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.54522.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.54522.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.54522.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.54522.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.54522.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.54522.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.54522.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.54522.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.54522.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	735.37	735.37	290.46	0.39
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	1568.13	1639.11	149.76	0.10
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	1421.48	1393.10	78.05	0.05
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	1334.83	1334.83	774.28	0.58
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	630.70	369.94	615.54	0.98
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1525.55	1566.17	276.32	0.18
	Gene expression data from Aft red fruit peel	exocarp	3	3	709.30	689.49	96.79	0.14
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1278.38	1282.93	161.46	0.13
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	796.84	795.39	138.20	0.17
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1511.85	1156.29	841.48	0.56
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	865.26	865.26	87.01	0.10
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1365.99	1146.95	699.67	0.51
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1152.25	1152.25	283.60	0.25
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	865.21	781.52	301.07	0.35
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	778.80	778.80	157.74	0.20
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	937.62	937.62	128.81	0.14
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	262.60	283.89	38.53	0.15
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	247.54	209.54	109.87	0.44
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	695.36	696.00	78.68	0.11
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	1089.24	1098.63	82.54	0.08
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	2017.51	1736.90	944.74	0.47
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	1266.08	1181.82	323.11	0.26
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	1583.18	1583.18	379.65	0.24
	Gene expression data from Micro-Tom root	root	3	3	1440.53	1533.31	498.70	0.35

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	529.979	2e-4	P
	GSM480171 extract 1	940.756	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	1669.2	2e-4	P
	GSM480201 extract 1	1639.11	2e-4	P
	GSM480202 extract 1	1396.07	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	1361.6	2e-4	P
	GSM480216 extract 1	1509.75	2e-4	P
	GSM480217 extract 1	1393.1	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	787.335	2e-4	P
	GSM480185 extract 1	1882.33	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	358.223	2e-4	P
	GSM480225 extract 1	234.03	2e-4	P
	GSM480226 extract 1	381.646	2e-4	P
	GSM480227 extract 1	1548.88	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	1231.16	2e-4	P
	GSM480208 extract 1	1566.17	2e-4	P
	GSM480207 extract 1	1779.31	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	814.458	2e-4	P
	GSM480210 extract 1	623.945	2e-4	P
	GSM480211 extract 1	689.486	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	1114.69	2e-4	P
	GSM480218 extract 1	1437.51	2e-4	P
	GSM480220 extract 1	1282.93	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	795.392	2e-4	P
	GSM480222 extract 1	935.757	2e-4	P
	GSM480223 extract 1	659.36	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	2472.74	2e-4	P
	GSM480192 extract 1	1156.29	2e-4	P
	GSM480191 extract 1	906.509	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	926.783	2e-4	P
	GSM480196 extract 1	803.726	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	802.046	2e-4	P
	GSM480198 extract 1	1146.95	2e-4	P
	GSM480199 extract 1	2148.98	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	951.711	2e-4	P
	GSM480193 extract 1	1352.78	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	721.521	2e-4	P
	GSM480230 extract 1	604.881	2e-4	P
	GSM480231 extract 1	1292.93	2e-4	P
	GSM480228 extract 1	841.511	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	890.341	2e-4	P
	GSM480168 extract 1	667.268	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1028.7	2e-4	P
	GSM480173 extract 1	846.53	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	285.783	2e-4	P
	GSM480174 extract 1	218.119	7e-4	P
	GSM480176 extract 1	283.886	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	371.358	2e-4	P
	GSM480178 extract 1	161.711	2e-4	P
	GSM480179 extract 1	209.538	7e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	695.995	2e-4	P
	GSM480205 extract 1	773.723	2e-4	P
	GSM480203 extract 1	616.375	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	1166.68	2e-4	P
	GSM480213 extract 1	1002.41	2e-4	P
	GSM480214 extract 1	1098.63	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	1244.87	2e-4	P
	GSM480180 extract 1	3070.77	2e-4	P
	GSM480182 extract 1	1736.9	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	1181.82	2e-4	P
	GSM480187 extract 1	993.453	2e-4	P
	GSM480189 extract 1	1622.97	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	1314.72	2e-4	P
	GSM480183 extract 1	1851.63	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	1533.31	2e-4	P
	GSM480166 extract 1	1886.33	2e-4	P
	GSM480167 extract 1	901.955	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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