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Expression Template: Les.4258.3.S1_at

Template Basic Information

Template name:	Les.4258.3.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U579429
External db links:	GenBank: BG128812

Annotations for unigene SGN-U579429 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEG-33-L15, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: ABC transport protein Annotation Keywords: transport; membrane transport; membrane protein; solute transport; ABC transport protein

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157345051\|emb\|CAO71779.1\|	1109		80.03	2229 bp (72.9%)	2
Description:	unnamed
arabidopsis	blastx	At5G64940.1	1088		75.87	2250 bp (73.6%)	2
Description:	Symbols: ATATH13 \| ATATH13 (ABC2 homolog 13) \| chr5:25966342-25970552 FORWARD
swissprot	blastx	P73627	481	1e-134	43.77	1767 bp (57.8%)	2
Description:	Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803) GN=sll1770 PE=3 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.4258.3.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.4258.3.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.4258.3.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.4258.3.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.4258.3.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.4258.3.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.4258.3.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.4258.3.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.4258.3.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.4258.3.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.4258.3.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	333.84	333.84	198.20	0.59
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	261.77	262.09	58.60	0.22
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	424.43	432.10	22.83	0.05
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	424.62	417.48	32.65	0.08
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	177.70	155.58	76.56	0.43
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	168.25	155.50	24.80	0.15
	Gene expression data from Aft red fruit peel	exocarp	3	3	200.62	178.81	47.50	0.24
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	322.17	305.71	36.48	0.11
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	194.90	199.14	11.84	0.06
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	37.90	38.85	4.95	0.13
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	136.10	136.10	36.06	0.26
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	86.38	90.28	8.91	0.10
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	112.08	112.08	2.79	0.02
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	187.31	168.31	53.42	0.29
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	108.89	108.89	72.19	0.66
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	433.80	433.80	6.64	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	635.34	276.56	649.18	1.02
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1158.05	1105.91	327.59	0.28
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	473.77	494.66	46.33	0.10
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	74.00	70.65	13.84	0.19
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	120.88	120.88	66.13	0.55
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	111.48	121.72	21.00	0.19
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	95.11	95.11	35.71	0.38
	Gene expression data from Micro-Tom root	root	3	3	19.37	18.46	1.98	0.10

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	193.689	2e-4	P
	GSM480171 extract 1	473.981	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	320.209	2e-4	P
	GSM480200 extract 1	203.016	2e-4	P
	GSM480201 extract 1	262.09	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	398.759	2e-4	P
	GSM480213 extract 1	432.101	2e-4	P
	GSM480214 extract 1	442.435	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	396.123	2e-4	P
	GSM480215 extract 1	417.476	2e-4	P
	GSM480217 extract 1	460.249	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	111.797	7e-4	P
	GSM480224 extract 1	163.686	2e-4	P
	GSM480226 extract 1	147.468	2e-4	P
	GSM480227 extract 1	287.834	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	152.419	2e-4	P
	GSM480207 extract 1	155.501	2e-4	P
	GSM480208 extract 1	196.835	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	167.942	2e-4	P
	GSM480209 extract 1	255.109	2e-4	P
	GSM480210 extract 1	178.809	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	363.981	2e-4	P
	GSM480218 extract 1	296.828	2e-4	P
	GSM480220 extract 1	305.709	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	204.036	2e-4	P
	GSM480222 extract 1	199.141	2e-4	P
	GSM480223 extract 1	181.526	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	32.5482	7e-4	P
	GSM480192 extract 1	42.3116	2e-4	P
	GSM480191 extract 1	38.8471	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	110.61	2e-4	P
	GSM480196 extract 1	161.601	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	90.277	2e-4	P
	GSM480198 extract 1	76.1871	2e-4	P
	GSM480199 extract 1	92.6676	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	110.111	2e-4	P
	GSM480193 extract 1	114.05	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	265.665	2e-4	P
	GSM480228 extract 1	174.187	2e-4	P
	GSM480229 extract 1	146.937	7e-4	P
	GSM480230 extract 1	162.435	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	159.941	2e-4	P
	GSM480168 extract 1	57.8425	7e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	438.5	2e-4	P
	GSM480172 extract 1	429.11	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	276.558	2e-4	P
	GSM480176 extract 1	1384.73	2e-4	P
	GSM480174 extract 1	244.742	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	1508.58	2e-4	P
	GSM480178 extract 1	1105.91	2e-4	P
	GSM480179 extract 1	859.658	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	494.658	2e-4	P
	GSM480204 extract 1	420.677	2e-4	P
	GSM480205 extract 1	505.987	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	89.2097	2e-4	P
	GSM480181 extract 1	62.1538	7e-4	P
	GSM480182 extract 1	70.6456	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	74.121	2e-4	P
	GSM480186 extract 1	167.65	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	121.717	2e-4	P
	GSM480188 extract 1	87.3189	7e-4	P
	GSM480189 extract 1	125.397	7e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	69.8587	7e-4	P
	GSM480184 extract 1	120.365	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	18.4556	7e-4	P
	GSM480165 extract 1	18.0062	0.014	P
	GSM480167 extract 1	21.637	0.004	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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