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Expression Template: LesAffx.295.1.S1_at

Template Basic Information

Template name:	LesAffx.295.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U573736
External db links:	GenBank: BM408538

Annotations for unigene SGN-U573736 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEC-35-C14, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "fatty acid hydroxylase, cytochrome P450-dependent" Annotation Keywords: lipid metabolism; fatty acid metabolism; cytochrome; P450

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|18000066\|gb\|AAL54884.1\|AF092913_1	719		82.55	1401 bp (71.3%)	3
Description:	cytochrome P450-dependent fatty acid hydroxylase [Nicotiana tabacum]
arabidopsis	blastx	At5G63450.1	396	3e-110	47.85	1383 bp (70.4%)	3
Description:	Symbols: CYP94B1 \| CYP94B1 (cytochrome P450, family 94, subfamily B, polypeptide 1); oxygen bi&hellip
swissprot	blastx	O81117	566	2e-160	64.3	1386 bp (70.5%)	3
Description:	Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.295.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.295.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.295.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.295.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.295.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.295.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.295.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.295.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.295.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.295.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.295.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	112.18	112.18	82.73	0.74
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	119.28	109.33	31.40	0.26
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	91.14	92.81	4.36	0.05
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	41.75	41.75	18.45	0.44
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	92.22	77.13	28.05	0.30
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	49.54	49.54	35.49	0.72
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	89.41	86.26	6.25	0.07
	Gene expression data from Aft red fruit peel	exocarp	3	3	47.39	46.85	3.56	0.08
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	90.94	91.09	14.95	0.16
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	45.27	42.96	14.76	0.33
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	90.46	91.24	20.71	0.23
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	36.46	36.46	24.06	0.66
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	57.01	44.26	23.95	0.42
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	39.17	39.17	24.08	0.61
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	32.22	37.57	15.33	0.48
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	112.37	112.37	50.94	0.45
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	128.13	128.13	12.09	0.09
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	23.91	24.33	6.05	0.25
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	12.95	14.12	2.19	0.17
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	107.01	103.18	10.71	0.10
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	42.21	42.21	2.10	0.05
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	126.90	136.74	46.49	0.37
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	53.61	55.95	23.96	0.45
	Gene expression data from Micro-Tom root	root	3	3	144.93	133.82	26.17	0.18

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	53.6803	0.024	P
	GSM480170 extract 1	170.674	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	154.447	0.002	P
	GSM480213 extract 1	94.0625	0.004	P
	GSM480214 extract 1	109.327	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	94.4071	0.002	P
	GSM480215 extract 1	86.1907	0.001	P
	GSM480216 extract 1	92.8099	7e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	54.7995	0.001	P
	GSM480186 extract 1	28.7083	0.002	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	124.586	0.004	P
	GSM480189 extract 1	77.1319	0.001	P
	GSM480188 extract 1	74.9551	7e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	24.4375	2e-4	P
	GSM480183 extract 1	74.635	0.006	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	96.6134	0.002	P
	GSM480206 extract 1	85.3634	2e-4	P
	GSM480208 extract 1	86.2616	0.003	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	46.8531	0.003	P
	GSM480210 extract 1	44.1318	0.003	P
	GSM480211 extract 1	51.1922	0.001	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	91.0948	0.008	P
	GSM480219 extract 1	75.9168	0.006	P
	GSM480220 extract 1	105.806	0.004	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	61.0435	0.002	P
	GSM480221 extract 1	31.7941	2e-4	P
	GSM480223 extract 1	42.9611	0.006	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	110.772	0.002	P
	GSM480192 extract 1	91.236	0.003	P
	GSM480191 extract 1	69.3768	7e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	53.473	7e-4	P
	GSM480196 extract 1	19.4472	0.001	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	42.1457	0.003	P
	GSM480197 extract 1	84.6366	7e-4	P
	GSM480198 extract 1	44.2592	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	56.1908	0.002	P
	GSM480194 extract 1	22.1423	0.003	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	38.3684	0.003	P
	GSM480230 extract 1	44.0154	0.004	P
	GSM480231 extract 1	9.70516	0.068	A
	GSM480229 extract 1	36.7714	7e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	148.388	2e-4	P
	GSM480169 extract 1	76.3528	0.014	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	136.684	0.003	P
	GSM480173 extract 1	119.584	0.003	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	17.6604	0.130	A
	GSM480174 extract 1	24.3316	0.150	A
	GSM480175 extract 1	29.7331	0.038	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	10.417	0.366	A
	GSM480177 extract 1	14.1206	0.304	A
	GSM480179 extract 1	14.298	0.171	A
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	103.182	0.002	P
	GSM480201 extract 1	98.7449	7e-4	P
	GSM480202 extract 1	119.112	7e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	44.3134	2e-4	P
	GSM480204 extract 1	42.2125	0.011	P
	GSM480205 extract 1	40.1106	0.004	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	167.688	0.001	P
	GSM480181 extract 1	76.2727	0.004	P
	GSM480182 extract 1	136.735	0.001	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	80.3627	2e-4	P
	GSM480224 extract 1	53.8044	0.001	P
	GSM480226 extract 1	58.0887	0.002	P
	GSM480227 extract 1	22.2031	0.024	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	126.145	7e-4	P
	GSM480167 extract 1	133.819	7e-4	P
	GSM480165 extract 1	174.825	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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