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Expression Template: LesAffx.7037.1.S1_at

Template Basic Information

Template name:	LesAffx.7037.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U580572
External db links:	GenBank: AW092489

Annotations for unigene SGN-U580572 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157335111\|emb\|CAO60941.1\|	219	2e-55	75.94	399 bp (45.5%)	1
Description:	unnamed
arabidopsis	blastx	At4G22000.1	193	1e-49	69.29	381 bp (43.4%)	1
Description:	similar to Os05g0114600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054462.1) \| chr4:11&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.7037.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.7037.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.7037.1.S1_at:ProbePair9	PM	data not available	data not available	data not available
LesAffx.7037.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.7037.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.7037.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.7037.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.7037.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.7037.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.7037.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.7037.1.S1_at:ProbePair6	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	279.46	279.46	0.06	0.00
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	403.00	408.54	20.27	0.05
	Gene expression data from Aft red fruit flesh	endocarp	3	3	403.64	400.18	26.08	0.06
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	288.08	285.91	3.93	0.01
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	498.32	497.14	25.79	0.05
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	354.85	382.78	119.80	0.34
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	216.24	216.24	47.66	0.22
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	262.18	262.18	72.26	0.28
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	178.98	138.79	104.32	0.58
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	359.43	361.81	18.10	0.05
	Gene expression data from Aft red fruit peel	exocarp	3	3	272.21	258.41	28.99	0.11
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	322.65	324.05	29.43	0.09
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	250.22	250.28	4.72	0.02
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	329.61	352.97	100.07	0.30
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	229.63	229.63	26.40	0.11
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	408.28	389.86	63.16	0.15
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	229.65	229.65	91.08	0.40
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	164.36	149.66	61.65	0.38
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	338.58	338.58	27.51	0.08
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	237.72	237.72	88.07	0.37
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	220.97	227.13	15.35	0.07
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	230.10	222.83	60.93	0.26
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	455.23	480.84	47.61	0.10
	Gene expression data from Micro-Tom root	root	3	3	386.66	382.98	26.79	0.07

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	279.419	2e-4	P
	GSM480170 extract 1	279.51	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	380.527	2e-4	P
	GSM480201 extract 1	408.537	2e-4	P
	GSM480202 extract 1	419.922	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	431.278	2e-4	P
	GSM480203 extract 1	379.466	2e-4	P
	GSM480204 extract 1	400.179	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	285.906	2e-4	P
	GSM480213 extract 1	292.623	2e-4	P
	GSM480214 extract 1	285.723	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	473.135	2e-4	P
	GSM480216 extract 1	497.142	2e-4	P
	GSM480215 extract 1	524.673	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	223.55	2e-4	P
	GSM480182 extract 1	458.209	2e-4	P
	GSM480181 extract 1	382.779	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	249.942	2e-4	P
	GSM480185 extract 1	182.543	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	313.277	2e-4	P
	GSM480183 extract 1	211.079	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480227 extract 1	331.102	2e-4	P
	GSM480224 extract 1	107.257	2e-4	P
	GSM480225 extract 1	115.022	2e-4	P
	GSM480226 extract 1	162.556	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	340.259	2e-4	P
	GSM480207 extract 1	376.214	2e-4	P
	GSM480208 extract 1	361.809	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	305.526	2e-4	P
	GSM480210 extract 1	252.692	2e-4	P
	GSM480209 extract 1	258.411	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	351.359	2e-4	P
	GSM480218 extract 1	324.054	2e-4	P
	GSM480220 extract 1	292.541	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	254.904	2e-4	P
	GSM480222 extract 1	245.47	2e-4	P
	GSM480223 extract 1	250.284	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	219.923	2e-4	P
	GSM480192 extract 1	352.97	2e-4	P
	GSM480191 extract 1	415.928	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	210.961	2e-4	P
	GSM480196 extract 1	248.294	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	389.859	2e-4	P
	GSM480198 extract 1	356.379	2e-4	P
	GSM480199 extract 1	478.596	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	165.243	2e-4	P
	GSM480194 extract 1	294.051	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	107.84	2e-4	P
	GSM480228 extract 1	163.682	0.001	P
	GSM480230 extract 1	135.629	2e-4	P
	GSM480231 extract 1	250.271	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	319.129	2e-4	P
	GSM480169 extract 1	358.027	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	175.44	2e-4	P
	GSM480173 extract 1	299.99	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	232.279	2e-4	P
	GSM480176 extract 1	227.133	2e-4	P
	GSM480175 extract 1	203.493	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	173.126	2e-4	P
	GSM480178 extract 1	294.342	2e-4	P
	GSM480179 extract 1	222.833	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	480.84	2e-4	P
	GSM480188 extract 1	400.302	2e-4	P
	GSM480189 extract 1	484.561	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	361.904	2e-4	P
	GSM480166 extract 1	382.979	2e-4	P
	GSM480167 extract 1	415.101	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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