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Expression Template: LesAffx.70159.1.S1_at

Template Basic Information

Template name:	LesAffx.70159.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U563223
External db links:	GenBank: BF176372

Annotations for unigene SGN-U563223 (manual: 0 | blast: 3 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|116268421\|gb\|ABJ96378.1\|	311	8e-83	48.76	1089 bp (66.8%)	3
Description:	hypothetical protein [Prunus persica]
arabidopsis	blastx	At2G01710.1	254	8e-68	45.69	921 bp (56.5%)	3
Description:	DNAJ heat shock N-terminal domain-containing protein \| chr2:315835-316770 FORWARD
swissprot	blastx	Q9NXW2	73.2	4e-12	40.95	315 bp (19.3%)	3
Description:	DnaJ homolog subfamily B member 12 OS=Homo sapiens GN=DNAJB12 PE=1 SV=3

GO Terms Annotations

GO:0051082unfolded protein binding
GO:0006457protein folding
GO:0031072heat shock protein binding

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.70159.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.70159.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.70159.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.70159.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.70159.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.70159.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.70159.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.70159.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.70159.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.70159.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.70159.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	91.03	91.03	1.54	0.02
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	129.74	123.64	10.57	0.08
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	182.69	161.91	49.23	0.27
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	74.28	74.28	0.73	0.01
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	151.53	158.54	18.66	0.12
	Gene expression data from Aft red fruit peel	exocarp	3	3	131.96	122.28	24.98	0.19
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	151.29	146.70	21.08	0.14
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	143.53	145.07	21.00	0.15
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	99.09	101.54	62.95	0.64
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	63.86	63.86	10.47	0.16
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	110.92	120.69	36.20	0.33
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	50.54	50.54	11.81	0.23
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	44.06	20.15	51.59	1.17
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	142.92	142.92	19.78	0.14
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	52.01	52.01	10.21	0.20
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	101.56	91.19	29.10	0.29
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	74.14	76.41	16.08	0.22
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	174.47	158.79	58.90	0.34
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	139.87	135.46	33.42	0.24
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	118.44	113.36	19.99	0.17
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	140.98	132.90	32.97	0.23
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	83.66	83.66	41.55	0.50
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	59.79	31.76	62.76	1.05
	Gene expression data from Micro-Tom root	root	3	3	64.85	73.76	16.08	0.25

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	89.9408	0.004	P
	GSM480170 extract 1	92.1194	0.038	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	141.943	0.003	P
	GSM480212 extract 1	123.624	0.004	P
	GSM480214 extract 1	123.645	0.001	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	238.902	0.002	P
	GSM480216 extract 1	147.246	0.002	P
	GSM480217 extract 1	161.91	0.002	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	74.7943	0.014	P
	GSM480186 extract 1	73.7609	0.011	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	158.54	0.004	P
	GSM480206 extract 1	165.666	0.003	P
	GSM480207 extract 1	130.385	0.001	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	122.283	0.001	P
	GSM480209 extract 1	113.266	0.002	P
	GSM480211 extract 1	160.324	0.003	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	132.894	0.002	P
	GSM480219 extract 1	174.291	0.002	P
	GSM480220 extract 1	146.698	0.002	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	121.801	0.004	P
	GSM480221 extract 1	145.073	0.006	P
	GSM480222 extract 1	163.719	0.003	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	160.778	0.014	P
	GSM480190 extract 1	101.539	0.019	P
	GSM480192 extract 1	34.9418	0.008	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	56.4566	0.019	P
	GSM480195 extract 1	71.2608	0.014	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	141.237	0.008	P
	GSM480199 extract 1	120.69	0.008	P
	GSM480198 extract 1	70.8371	0.019	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	42.187	0.030	P
	GSM480194 extract 1	58.8942	0.024	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	14.6026	0.046	P
	GSM480231 extract 1	121.335	0.004	P
	GSM480228 extract 1	20.9222	0.068	A
	GSM480229 extract 1	19.3803	0.019	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	156.904	0.004	P
	GSM480168 extract 1	128.927	0.014	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	44.7886	0.038	P
	GSM480172 extract 1	59.2229	0.019	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	79.0634	0.019	P
	GSM480174 extract 1	91.1874	0.011	P
	GSM480176 extract 1	134.422	0.014	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	57.0526	0.008	P
	GSM480177 extract 1	88.9678	0.014	P
	GSM480179 extract 1	76.4081	0.008	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	125	0.004	P
	GSM480201 extract 1	158.79	0.004	P
	GSM480202 extract 1	239.618	0.004	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	108.865	0.002	P
	GSM480203 extract 1	175.278	0.001	P
	GSM480205 extract 1	135.465	0.002	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	140.472	0.014	P
	GSM480181 extract 1	101.476	0.024	P
	GSM480182 extract 1	113.361	0.014	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	177.235	0.019	P
	GSM480188 extract 1	132.899	0.014	P
	GSM480189 extract 1	112.799	0.024	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	113.043	0.024	P
	GSM480183 extract 1	54.2847	0.019	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	40.0463	0.019	P
	GSM480226 extract 1	22.4805	0.019	P
	GSM480225 extract 1	23.4819	0.219	A
	GSM480227 extract 1	153.156	0.001	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	46.2857	0.030	P
	GSM480166 extract 1	73.7555	0.024	P
	GSM480167 extract 1	74.4996	0.011	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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