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Expression Template: Les.2842.1.S1_at

Template Basic Information

Template name:	Les.2842.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U577014
External db links:	GenBank: BE458888

Annotations for unigene SGN-U577014 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15235514\|ref\|NP_195447.1\|	139	3e-31	46.24	501 bp (61.5%)	3
Description:	MEE59 (maternal effect embryo arrest 59) [Arabidopsis thaliana] >gi13877859\|gb\|AAK44007.1\|AF370&hellip
arabidopsis	blastx	At4G37300.1	139	3e-33	46.24	501 bp (61.5%)	3
Description:	Symbols: MEE59 \| MEE59 (maternal effect embryo arrest 59) \| chr4:17554799-17555492 FORWARD
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.2842.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.2842.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.2842.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.2842.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.2842.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.2842.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.2842.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.2842.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.2842.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.2842.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.2842.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	3.13	3.13	3.89	1.24
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	673.08	671.76	2.40	0.00
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	343.33	344.96	29.02	0.08
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	405.84	405.84	56.78	0.14
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	401.36	380.01	40.25	0.10
	Gene expression data from Aft red fruit peel	exocarp	3	3	695.61	693.74	48.70	0.07
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	275.92	280.79	17.30	0.06
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	565.81	575.18	18.30	0.03
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	300.56	301.83	61.29	0.20
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	386.60	386.60	10.86	0.03
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	367.23	382.74	34.75	0.09
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	362.31	362.31	25.20	0.07
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	514.35	460.11	147.83	0.29
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	28.91	28.91	12.79	0.44
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	0.37	0.37	0.35	0.93
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	0.69	0.66	0.11	0.16
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	0.72	0.46	0.47	0.65
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	485.63	482.98	46.16	0.10
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	837.01	839.35	28.77	0.03
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	347.28	313.35	65.01	0.19
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	339.45	326.38	115.13	0.34
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	425.70	425.70	32.54	0.08
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	565.20	496.52	208.08	0.37
	Gene expression data from Micro-Tom root	root	3	3	353.36	384.47	58.82	0.17

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	0.381889	0.932	A
	GSM480170 extract 1	5.88099	0.399	A
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	671.621	2e-4	P
	GSM480216 extract 1	675.847	2e-4	P
	GSM480217 extract 1	671.763	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	371.498	2e-4	P
	GSM480187 extract 1	313.525	2e-4	P
	GSM480189 extract 1	344.965	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	445.991	2e-4	P
	GSM480183 extract 1	365.693	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	380.014	2e-4	P
	GSM480207 extract 1	376.284	2e-4	P
	GSM480208 extract 1	447.797	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	693.738	2e-4	P
	GSM480209 extract 1	647.877	2e-4	P
	GSM480211 extract 1	745.217	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	256.712	2e-4	P
	GSM480219 extract 1	280.794	2e-4	P
	GSM480220 extract 1	290.265	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	575.181	2e-4	P
	GSM480223 extract 1	577.514	2e-4	P
	GSM480222 extract 1	544.723	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	361.196	2e-4	P
	GSM480190 extract 1	301.834	2e-4	P
	GSM480192 extract 1	238.637	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	394.273	2e-4	P
	GSM480195 extract 1	378.921	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	382.744	2e-4	P
	GSM480197 extract 1	327.423	2e-4	P
	GSM480198 extract 1	391.53	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	344.49	2e-4	P
	GSM480193 extract 1	380.13	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	445.346	2e-4	P
	GSM480231 extract 1	731.923	2e-4	P
	GSM480230 extract 1	405.245	2e-4	P
	GSM480229 extract 1	474.87	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	37.958	0.002	P
	GSM480169 extract 1	19.8647	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	0.126874	0.992	A
	GSM480173 extract 1	0.620656	0.888	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	0.812266	0.932	A
	GSM480175 extract 1	0.60104	0.970	A
	GSM480176 extract 1	0.66051	0.919	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	0.427988	0.976	A
	GSM480179 extract 1	1.25844	0.932	A
	GSM480178 extract 1	0.464436	0.944	A
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	482.984	2e-4	P
	GSM480200 extract 1	533.062	2e-4	P
	GSM480202 extract 1	440.854	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	839.347	2e-4	P
	GSM480203 extract 1	807.146	2e-4	P
	GSM480204 extract 1	864.55	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	422.232	2e-4	P
	GSM480212 extract 1	306.248	2e-4	P
	GSM480214 extract 1	313.352	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	326.384	2e-4	P
	GSM480182 extract 1	231.412	2e-4	P
	GSM480181 extract 1	460.556	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	402.695	2e-4	P
	GSM480186 extract 1	448.71	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	562.065	2e-4	P
	GSM480225 extract 1	407.587	2e-4	P
	GSM480226 extract 1	430.972	2e-4	P
	GSM480227 extract 1	860.188	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	384.469	2e-4	P
	GSM480165 extract 1	285.521	2e-4	P
	GSM480166 extract 1	390.09	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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