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Expression Template: LesAffx.64732.1.S1_at

Template Basic Information

Template name:	LesAffx.64732.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U577976
External db links:	GenBank: BE463183

Annotations for unigene SGN-U577976 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLED-13-M21, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: GDP-fucose synthetase Annotation Keywords: protein biosynthesis; protein modification; glycoprotein biosynthesis; amino acid glycosylation; nucleic acid metabolism; nucleotide-sugar metabolism

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|18394547\|ref\|NP_564040.1\|	530	7e-149	83.71	921 bp (82.4%)	3
Description:	GER2; binding / catalytic/ coenzyme binding [Arabidopsis thaliana] >gi75174832\|sp\|Q9LMU0.1\|FCL2&hellip
arabidopsis	blastx	At1G17890.3	530	5e-151	83.71	921 bp (82.4%)	3
Description:	Symbols: GER2 \| GER2; catalytic \| chr1:6154471-6155433 REVERSE
swissprot	blastx	Q9LMU0	530	4e-150	83.71	921 bp (82.4%)	3
Description:	Putative GDP-L-fucose synthase 2 OS=Arabidopsis thaliana GN=GER2 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.64732.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.64732.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.64732.1.S1_at:ProbePair9	PM	data not available	data not available	data not available
LesAffx.64732.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.64732.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.64732.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.64732.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.64732.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.64732.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.64732.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.64732.1.S1_at:ProbePair7	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	160.66	160.66	29.93	0.19
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	151.76	146.95	14.82	0.10
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	178.08	170.77	21.25	0.12
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	201.57	207.62	21.49	0.11
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	128.23	94.94	80.69	0.63
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	114.22	118.18	8.82	0.08
	Gene expression data from Aft red fruit peel	exocarp	3	3	149.81	147.88	10.53	0.07
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	133.71	138.97	16.24	0.12
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	93.28	91.89	22.18	0.24
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	206.26	184.02	70.74	0.34
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	234.38	234.38	5.06	0.02
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	199.44	204.35	9.62	0.05
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	212.89	212.89	33.87	0.16
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	123.74	97.46	63.53	0.51
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	201.25	201.25	16.21	0.08
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	121.10	121.10	0.18	0.00
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	135.83	146.79	25.75	0.19
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	207.38	205.14	14.46	0.07
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	180.15	171.47	24.30	0.13
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	244.07	243.43	20.79	0.09
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	277.68	277.68	5.55	0.02
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	286.30	270.27	33.09	0.12
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	294.09	294.09	1.99	0.01
	Gene expression data from Micro-Tom root	root	3	3	297.29	292.94	24.90	0.08

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	181.829	7e-4	P
	GSM480170 extract 1	139.498	7e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	139.928	7e-4	P
	GSM480212 extract 1	146.954	7e-4	P
	GSM480213 extract 1	168.384	7e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	161.461	7e-4	P
	GSM480217 extract 1	202.019	7e-4	P
	GSM480216 extract 1	170.77	7e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	219.378	7e-4	P
	GSM480181 extract 1	207.619	7e-4	P
	GSM480182 extract 1	177.705	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	74.8878	0.002	P
	GSM480224 extract 1	101.715	7e-4	P
	GSM480226 extract 1	88.1709	7e-4	P
	GSM480227 extract 1	248.135	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	118.184	7e-4	P
	GSM480206 extract 1	120.357	7e-4	P
	GSM480207 extract 1	104.113	7e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	140.381	7e-4	P
	GSM480210 extract 1	161.168	7e-4	P
	GSM480211 extract 1	147.885	7e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	115.495	7e-4	P
	GSM480220 extract 1	146.673	7e-4	P
	GSM480219 extract 1	138.969	7e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	71.8255	0.002	P
	GSM480223 extract 1	91.89	0.001	P
	GSM480222 extract 1	116.117	7e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	285.448	7e-4	P
	GSM480192 extract 1	149.316	2e-4	P
	GSM480191 extract 1	184.023	7e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	237.966	7e-4	P
	GSM480195 extract 1	230.805	7e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	188.353	7e-4	P
	GSM480198 extract 1	205.621	7e-4	P
	GSM480199 extract 1	204.348	7e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	188.941	7e-4	P
	GSM480193 extract 1	236.845	7e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	104.489	2e-4	P
	GSM480229 extract 1	82.023	0.001	P
	GSM480230 extract 1	90.438	2e-4	P
	GSM480231 extract 1	218.013	7e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	189.788	7e-4	P
	GSM480169 extract 1	212.707	7e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	121.229	7e-4	P
	GSM480172 extract 1	120.981	7e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	106.416	2e-4	P
	GSM480174 extract 1	154.284	7e-4	P
	GSM480176 extract 1	146.793	7e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	222.829	7e-4	P
	GSM480179 extract 1	194.171	7e-4	P
	GSM480178 extract 1	205.137	7e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	171.468	7e-4	P
	GSM480202 extract 1	161.388	7e-4	P
	GSM480200 extract 1	207.604	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	265.167	7e-4	P
	GSM480204 extract 1	223.605	2e-4	P
	GSM480205 extract 1	243.426	7e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	273.757	7e-4	P
	GSM480186 extract 1	281.61	7e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	270.27	2e-4	P
	GSM480188 extract 1	324.354	7e-4	P
	GSM480189 extract 1	264.284	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	295.498	7e-4	P
	GSM480184 extract 1	292.685	7e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	292.939	2e-4	P
	GSM480165 extract 1	274.857	7e-4	P
	GSM480167 extract 1	324.084	7e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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