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Expression Template: Les.3418.2.S1_a_at

Template Basic Information

Template name:	Les.3418.2.S1_a_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U583878
External db links:	GenBank: BI935977

Annotations for unigene SGN-U583878 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157341131\|emb\|CAO49038.1\|	222	2e-56	68.83	462 bp (67.7%)	2
Description:	unnamed
arabidopsis	blastx	At3G01980.4	178	2e-45	53.59	459 bp (67.3%)	2
Description:	short-chain dehydrogenase/reductase (SDR) family protein \| chr3:327754-328840 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.3418.2.S1_a_at:ProbePair0	PM	data not available	data not available	data not available
Les.3418.2.S1_a_at:ProbePair4	PM	data not available	data not available	data not available
Les.3418.2.S1_a_at:ProbePair5	PM	data not available	data not available	data not available
Les.3418.2.S1_a_at:ProbePair6	PM	data not available	data not available	data not available
Les.3418.2.S1_a_at:ProbePair7	PM	data not available	data not available	data not available
Les.3418.2.S1_a_at:ProbePair8	PM	data not available	data not available	data not available
Les.3418.2.S1_a_at:ProbePair9	PM	data not available	data not available	data not available
Les.3418.2.S1_a_at:ProbePair1	PM	data not available	data not available	data not available
Les.3418.2.S1_a_at:ProbePair10	PM	data not available	data not available	data not available
Les.3418.2.S1_a_at:ProbePair2	PM	data not available	data not available	data not available
Les.3418.2.S1_a_at:ProbePair3	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	564.56	564.56	262.25	0.46
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	1314.03	1149.34	342.78	0.26
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	5048.16	5048.16	23.91	0.00
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	4061.34	3952.73	409.67	0.10
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1035.97	1064.37	65.88	0.06
	Gene expression data from Aft red fruit peel	exocarp	3	3	3953.35	3845.85	199.30	0.05
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1319.39	1307.59	266.91	0.20
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	2972.07	2900.81	150.46	0.05
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	2970.62	2628.48	638.09	0.21
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	5137.37	5137.37	1062.85	0.21
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	3707.74	3842.39	338.39	0.09
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	5180.12	5180.12	714.26	0.14
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	4981.83	5015.00	692.43	0.14
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	548.79	548.79	89.03	0.16
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	256.11	256.11	21.20	0.08
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	373.81	363.29	44.16	0.12
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	436.67	434.26	87.21	0.20
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	1459.84	1557.32	175.19	0.12
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	4443.26	4293.22	274.87	0.06
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	4204.53	4201.11	410.98	0.10
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	2177.74	1933.72	520.56	0.24
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	3985.54	3806.53	416.70	0.10
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	4260.00	4260.00	629.95	0.15
	Gene expression data from Micro-Tom root	root	3	3	739.22	676.36	110.40	0.15

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	750	2e-4	P
	GSM480171 extract 1	379.125	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	1084.67	2e-4	P
	GSM480213 extract 1	1708.07	2e-4	P
	GSM480214 extract 1	1149.34	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	5031.25	2e-4	P
	GSM480185 extract 1	5065.07	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480227 extract 1	3728.05	2e-4	P
	GSM480224 extract 1	4611.86	2e-4	P
	GSM480225 extract 1	3771.44	2e-4	P
	GSM480226 extract 1	4134.01	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	1082.89	2e-4	P
	GSM480208 extract 1	1064.37	2e-4	P
	GSM480207 extract 1	960.657	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	3830.89	2e-4	P
	GSM480209 extract 1	4183.32	2e-4	P
	GSM480211 extract 1	3845.85	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	1307.59	2e-4	P
	GSM480219 extract 1	1592.01	2e-4	P
	GSM480218 extract 1	1058.58	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	3144.92	2e-4	P
	GSM480222 extract 1	2900.81	2e-4	P
	GSM480223 extract 1	2870.48	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	2628.48	2e-4	P
	GSM480190 extract 1	3706.81	2e-4	P
	GSM480191 extract 1	2576.57	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	5888.92	2e-4	P
	GSM480196 extract 1	4385.82	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	3842.39	2e-4	P
	GSM480197 extract 1	3958.07	2e-4	P
	GSM480199 extract 1	3322.75	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	5685.18	2e-4	P
	GSM480194 extract 1	4675.06	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	5179.34	2e-4	P
	GSM480231 extract 1	5779.3	2e-4	P
	GSM480229 extract 1	4118	2e-4	P
	GSM480230 extract 1	4850.66	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	611.744	2e-4	P
	GSM480169 extract 1	485.833	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	271.101	2e-4	P
	GSM480172 extract 1	241.12	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	335.855	2e-4	P
	GSM480174 extract 1	363.294	2e-4	P
	GSM480176 extract 1	422.28	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	525.06	2e-4	P
	GSM480177 extract 1	434.257	2e-4	P
	GSM480179 extract 1	350.699	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	1257.6	2e-4	P
	GSM480201 extract 1	1557.32	2e-4	P
	GSM480200 extract 1	1564.61	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	4760.49	2e-4	P
	GSM480203 extract 1	4293.22	2e-4	P
	GSM480205 extract 1	4276.06	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	4617.2	2e-4	P
	GSM480215 extract 1	4201.11	2e-4	P
	GSM480216 extract 1	3795.27	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	1824.01	2e-4	P
	GSM480180 extract 1	2775.48	2e-4	P
	GSM480181 extract 1	1933.72	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	4461.83	2e-4	P
	GSM480188 extract 1	3688.25	2e-4	P
	GSM480189 extract 1	3806.53	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	4705.45	2e-4	P
	GSM480184 extract 1	3814.56	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	676.362	2e-4	P
	GSM480166 extract 1	866.703	2e-4	P
	GSM480167 extract 1	674.605	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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