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Expression Template: Les.3244.1.S1_at

Template Basic Information

Template name:	Les.3244.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U563581
External db links:	GenBank: BG130788

Annotations for unigene SGN-U563581 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147798814\|emb\|CAN74239.1\|	390	1e-106	71.48	810 bp (71.1%)	1
Description:	hypothetical protein [Vitis vinifera]
arabidopsis	blastx	At5G27830.3	253	2e-67	50.59	753 bp (66.1%)	1
Description:	similar to hypothetical protein MtrDRAFT_AC136288g4v1 [Medicago truncatula] (GB:ABE80618.1); c&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.3244.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.3244.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.3244.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.3244.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.3244.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.3244.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.3244.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.3244.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.3244.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.3244.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.3244.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	123.56	123.56	9.17	0.07
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	179.94	183.82	16.68	0.09
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	212.02	221.49	34.50	0.16
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	181.10	181.41	5.84	0.03
	Gene expression data from Aft red fruit peel	exocarp	3	3	171.06	173.60	18.77	0.11
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	207.79	201.19	26.83	0.13
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	148.06	150.98	11.05	0.07
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	168.95	150.76	44.76	0.26
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	229.03	229.03	2.49	0.01
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	161.33	157.12	15.43	0.10
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	233.76	233.76	73.97	0.32
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	136.69	105.18	86.69	0.63
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	160.04	160.04	0.35	0.00
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	99.18	99.18	3.98	0.04
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	120.79	121.22	6.36	0.05
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	133.37	135.51	12.65	0.09
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	241.17	260.05	35.59	0.15
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	169.17	169.62	13.09	0.08
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	355.54	358.54	20.82	0.06
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	233.36	233.36	32.35	0.14
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	168.56	167.42	12.65	0.08
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	262.54	262.54	40.54	0.15
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	155.46	98.96	139.73	0.90
	Gene expression data from Micro-Tom root	root	3	3	215.37	224.68	22.03	0.10

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	117.081	7e-4	P
	GSM480171 extract 1	130.043	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	194.343	7e-4	P
	GSM480201 extract 1	161.673	2e-4	P
	GSM480202 extract 1	183.818	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	221.494	2e-4	P
	GSM480181 extract 1	240.803	2e-4	P
	GSM480180 extract 1	173.777	7e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	186.777	7e-4	P
	GSM480206 extract 1	175.113	7e-4	P
	GSM480207 extract 1	181.406	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	173.604	7e-4	P
	GSM480211 extract 1	188.434	7e-4	P
	GSM480210 extract 1	151.152	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	184.872	7e-4	P
	GSM480219 extract 1	237.299	2e-4	P
	GSM480220 extract 1	201.188	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	135.836	7e-4	P
	GSM480221 extract 1	150.984	7e-4	P
	GSM480223 extract 1	157.351	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	219.94	2e-4	P
	GSM480190 extract 1	136.151	7e-4	P
	GSM480192 extract 1	150.758	7e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	227.27	0.002	P
	GSM480195 extract 1	230.788	7e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	157.123	7e-4	P
	GSM480198 extract 1	148.435	7e-4	P
	GSM480197 extract 1	178.42	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	181.451	2e-4	P
	GSM480194 extract 1	286.064	0.002	P
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	264.479	7e-4	P
	GSM480229 extract 1	71.9205	0.003	P
	GSM480228 extract 1	101.166	2e-4	P
	GSM480230 extract 1	109.195	0.003	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	159.791	2e-4	P
	GSM480169 extract 1	160.292	7e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	101.996	0.001	P
	GSM480172 extract 1	96.3692	7e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	126.925	7e-4	P
	GSM480176 extract 1	121.22	0.001	P
	GSM480175 extract 1	114.219	0.001	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	119.779	7e-4	P
	GSM480177 extract 1	144.813	7e-4	P
	GSM480178 extract 1	135.506	7e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	263.34	7e-4	P
	GSM480204 extract 1	200.113	2e-4	P
	GSM480205 extract 1	260.049	7e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	169.625	7e-4	P
	GSM480212 extract 1	155.855	2e-4	P
	GSM480214 extract 1	182.017	7e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	374.687	7e-4	P
	GSM480216 extract 1	358.536	2e-4	P
	GSM480217 extract 1	333.381	7e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	210.485	7e-4	P
	GSM480186 extract 1	256.234	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	167.421	2e-4	P
	GSM480189 extract 1	156.511	2e-4	P
	GSM480188 extract 1	181.742	7e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	291.211	0.001	P
	GSM480183 extract 1	233.875	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	62.0893	0.008	P
	GSM480224 extract 1	77.8673	0.002	P
	GSM480226 extract 1	120.056	0.001	P
	GSM480227 extract 1	361.808	7e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	190.218	7e-4	P
	GSM480166 extract 1	231.217	7e-4	P
	GSM480167 extract 1	224.678	7e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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