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Expression Template: Les.390.2.S1_at

Template Basic Information

Template name:	Les.390.2.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U581958
External db links:	GenBank: AW442458

Annotations for unigene SGN-U581958 (manual: 3 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEC-6-A9, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "kinase, shaggy" Annotation Keywords: signal transduction; kinase; phosphorylation; shaggy; development

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|619894\|emb\|CAA58594.1\|	811	97.8	1227 bp (74.1%)	2
Description:	Petunia Shaggy kinase 4 [Petunia x hybrida]
arabidopsis	blastx	At5G14640.1	722	87.1	1224 bp (74.0%)	2
Description:	protein kinase family protein \| chr5:4719353-4721775 REVERSE
swissprot	blastx	Q8VZD5	722	87.1	1224 bp (74.0%)	2
Description:	Shaggy-related protein kinase epsilon OS=Arabidopsis thaliana GN=ASK5 PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.390.2.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.390.2.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.390.2.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.390.2.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.390.2.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.390.2.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.390.2.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.390.2.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.390.2.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.390.2.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.390.2.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	803.24	803.24	120.26	0.15
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	1222.60	1091.96	359.61	0.29
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	874.78	888.22	41.71	0.05
	Gene expression data from Aft red fruit peel	exocarp	3	3	1290.96	1283.79	36.57	0.03
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1041.92	1018.42	65.40	0.06
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1049.23	1061.70	41.41	0.04
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1072.42	1032.98	159.64	0.15
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1435.18	1435.18	290.01	0.20
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1042.88	1049.14	74.19	0.07
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1366.61	1366.61	117.81	0.09
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1698.57	1740.93	233.33	0.14
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	969.31	969.31	44.83	0.05
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	568.76	568.76	26.33	0.05
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	934.61	890.66	129.90	0.14
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1212.70	1197.50	36.83	0.03
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	1065.80	1054.74	84.82	0.08
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	1616.96	1607.48	113.01	0.07
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	1006.42	1022.62	51.27	0.05
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	1578.11	1571.04	16.64	0.01
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	1123.55	1211.74	154.71	0.14
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	1578.67	1578.67	125.03	0.08
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	1121.79	1110.02	26.70	0.02
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	1544.61	1544.61	98.79	0.06
	Gene expression data from Micro-Tom root	root	3	3	964.71	953.06	42.61	0.04

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	718.208	2e-4	P
	GSM480171 extract 1	888.275	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480227 extract 1	1748.61	2e-4	P
	GSM480225 extract 1	957.857	2e-4	P
	GSM480224 extract 1	1151.37	2e-4	P
	GSM480226 extract 1	1032.56	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	828.001	2e-4	P
	GSM480206 extract 1	888.218	2e-4	P
	GSM480208 extract 1	908.109	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	1258.51	2e-4	P
	GSM480209 extract 1	1330.59	2e-4	P
	GSM480211 extract 1	1283.79	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	1018.42	2e-4	P
	GSM480219 extract 1	1115.83	2e-4	P
	GSM480220 extract 1	991.519	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	1082.97	2e-4	P
	GSM480223 extract 1	1003.01	2e-4	P
	GSM480221 extract 1	1061.7	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	1248.08	2e-4	P
	GSM480192 extract 1	936.195	2e-4	P
	GSM480190 extract 1	1032.98	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	1230.11	2e-4	P
	GSM480195 extract 1	1640.24	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	1113.75	2e-4	P
	GSM480198 extract 1	965.761	2e-4	P
	GSM480199 extract 1	1049.14	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	1449.92	2e-4	P
	GSM480194 extract 1	1283.31	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	1698.43	2e-4	P
	GSM480228 extract 1	1783.43	2e-4	P
	GSM480229 extract 1	1380.05	2e-4	P
	GSM480231 extract 1	1932.39	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	937.613	2e-4	P
	GSM480169 extract 1	1001.01	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	587.379	2e-4	P
	GSM480173 extract 1	550.136	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	832.382	2e-4	P
	GSM480174 extract 1	890.665	2e-4	P
	GSM480176 extract 1	1080.78	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	1197.5	2e-4	P
	GSM480179 extract 1	1185.9	2e-4	P
	GSM480178 extract 1	1254.69	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	1054.74	2e-4	P
	GSM480202 extract 1	987.051	2e-4	P
	GSM480200 extract 1	1155.6	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	1508.99	2e-4	P
	GSM480205 extract 1	1734.41	2e-4	P
	GSM480204 extract 1	1607.48	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	1022.62	2e-4	P
	GSM480212 extract 1	948.998	2e-4	P
	GSM480213 extract 1	1047.63	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	1571.04	2e-4	P
	GSM480216 extract 1	1566.18	2e-4	P
	GSM480217 extract 1	1597.12	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	1211.74	2e-4	P
	GSM480181 extract 1	1214	2e-4	P
	GSM480182 extract 1	944.909	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1667.08	2e-4	P
	GSM480186 extract 1	1490.26	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	1103	2e-4	P
	GSM480188 extract 1	1152.35	2e-4	P
	GSM480189 extract 1	1110.02	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	1474.76	2e-4	P
	GSM480183 extract 1	1614.47	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	929.144	2e-4	P
	GSM480167 extract 1	953.058	2e-4	P
	GSM480166 extract 1	1011.93	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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