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Expression Template: LesAffx.25451.1.S1_at

Template Basic Information

Template name:	LesAffx.25451.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U573424
External db links:	GenBank: BE450073

Annotations for unigene SGN-U573424 (manual: 1 | blast: 3 | go: 2 )

Manual annotations

Based on clone cLEC-6-J5, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: sulfate adenylyltransferase Annotation Keywords: other; enzyme; adenyltransferase

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|479090\|emb\|CAA55655.1\|	930		97.41	1392 bp (82.0%)	1
Description:	sulfate adenylyltransferase [Solanum tuberosum]
arabidopsis	blastx	At3G22890.1	743		78.42	1401 bp (82.6%)	1
Description:	Symbols: APS1 \| APS1 (ATP sulfurylase 3) \| chr3:8112844-8114741 FORWARD
swissprot	blastx	O95340	497	7e-140	61.54	1170 bp (68.9%)	1
Description:	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 OS=Homo sapiens GN=PAPSS2 PE=1 SV=2

GO Terms Annotations

GO:0000103sulfate assimilation
GO:0004781sulfate adenylyltransferase (ATP) activity

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.25451.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.25451.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.25451.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.25451.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.25451.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.25451.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.25451.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.25451.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.25451.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.25451.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.25451.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	191.68	191.68	122.56	0.64
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	640.15	632.91	50.02	0.08
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	189.31	199.85	91.75	0.48
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	165.15	161.96	20.54	0.12
	Gene expression data from Aft red fruit peel	exocarp	3	3	1988.25	2064.90	181.97	0.09
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	172.02	176.56	8.18	0.05
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	494.11	471.58	75.06	0.15
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	23.84	24.44	5.60	0.23
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	152.19	152.19	105.17	0.69
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	142.54	170.22	62.14	0.44
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	270.66	270.66	213.03	0.79
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	992.72	932.54	243.20	0.24
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	784.93	784.93	401.66	0.51
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	88.96	88.96	14.68	0.17
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	161.76	149.68	29.14	0.18
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	222.06	207.34	36.18	0.16
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	487.33	519.31	155.16	0.32
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	1492.10	1483.38	100.08	0.07
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	318.74	290.52	68.28	0.21
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	115.20	127.25	52.72	0.46
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	239.45	239.45	2.72	0.01
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	430.66	430.66	286.54	0.67
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	721.24	722.34	153.50	0.21
	Gene expression data from Micro-Tom root	root	3	3	4220.54	4170.85	143.22	0.03

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	105.017	0.008	P
	GSM480171 extract 1	278.34	0.002	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	594.145	2e-4	P
	GSM480215 extract 1	693.395	2e-4	P
	GSM480217 extract 1	632.908	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	92.7526	0.003	P
	GSM480188 extract 1	275.342	2e-4	P
	GSM480189 extract 1	199.846	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	146.393	2e-4	P
	GSM480206 extract 1	161.961	2e-4	P
	GSM480208 extract 1	187.096	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	2064.9	2e-4	P
	GSM480209 extract 1	2119.36	2e-4	P
	GSM480211 extract 1	1780.5	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	176.94	2e-4	P
	GSM480218 extract 1	162.577	2e-4	P
	GSM480220 extract 1	176.555	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	471.581	2e-4	P
	GSM480222 extract 1	577.849	2e-4	P
	GSM480223 extract 1	432.897	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	24.4426	0.006	P
	GSM480190 extract 1	29.1096	0.171	A
	GSM480192 extract 1	17.9618	0.107	A
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	226.555	2e-4	P
	GSM480196 extract 1	77.8274	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	71.3691	7e-4	P
	GSM480198 extract 1	170.217	2e-4	P
	GSM480199 extract 1	186.02	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	421.298	2e-4	P
	GSM480194 extract 1	120.023	7e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	879.843	2e-4	P
	GSM480229 extract 1	772.36	2e-4	P
	GSM480231 extract 1	1333.44	2e-4	P
	GSM480230 extract 1	985.244	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	1068.95	2e-4	P
	GSM480168 extract 1	500.915	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	99.3399	0.014	P
	GSM480173 extract 1	78.5784	0.006	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	149.678	2e-4	P
	GSM480175 extract 1	140.61	0.011	P
	GSM480176 extract 1	195	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	263.28	2e-4	P
	GSM480178 extract 1	195.556	2e-4	P
	GSM480179 extract 1	207.342	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	624	2e-4	P
	GSM480201 extract 1	519.311	2e-4	P
	GSM480202 extract 1	318.67	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	1396.67	2e-4	P
	GSM480204 extract 1	1483.38	2e-4	P
	GSM480205 extract 1	1596.26	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	290.516	2e-4	P
	GSM480213 extract 1	396.602	2e-4	P
	GSM480214 extract 1	269.09	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	160.85	2e-4	P
	GSM480182 extract 1	57.4894	7e-4	P
	GSM480180 extract 1	127.252	7e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	241.377	2e-4	P
	GSM480186 extract 1	237.529	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	633.271	2e-4	P
	GSM480184 extract 1	228.044	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	767.744	2e-4	P
	GSM480224 extract 1	902.57	2e-4	P
	GSM480225 extract 1	537.709	2e-4	P
	GSM480227 extract 1	676.944	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	4381.99	2e-4	P
	GSM480165 extract 1	4108.78	2e-4	P
	GSM480167 extract 1	4170.85	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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