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Expression Template: LesAffx.43628.1.S1_at

Template Basic Information

Template name:	LesAffx.43628.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U569555
External db links:	GenBank: AI776948

Annotations for unigene SGN-U569555 (manual: 0 | blast: 3 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|145688390\|gb\|ABC69274.2\|	204	2e-50	71.33	420 bp (30.3%)	2
Description:	putative DnaJ protein [Camellia sinensis]
arabidopsis	blastx	At1G80920.1	164	2e-40	59.15	420 bp (30.3%)	2
Description:	Symbols: J8 \| J8; heat shock protein binding / unfolded protein binding \| chr1:30408755-304094&hellip
swissprot	blastx	Q9SAG8	164	1e-39	59.15	420 bp (30.3%)	2
Description:	Chaperone protein dnaJ 8, chloroplastic OS=Arabidopsis thaliana GN=ATJ8 PE=2 SV=1

GO Terms Annotations

GO:0051082unfolded protein binding
GO:0006457protein folding
GO:0031072heat shock protein binding

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.43628.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.43628.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.43628.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.43628.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.43628.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.43628.1.S1_at:ProbePair9	PM	data not available	data not available	data not available
LesAffx.43628.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.43628.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.43628.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.43628.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.43628.1.S1_at:ProbePair4	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	4033.96	4033.96	1869.41	0.46
	Gene expression data from Aft red fruit flesh	endocarp	3	3	230.39	233.83	18.38	0.08
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	469.60	418.92	113.79	0.24
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	183.32	201.99	88.61	0.48
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	55.55	55.55	23.92	0.43
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	103.99	92.83	19.63	0.19
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	303.03	326.20	71.55	0.24
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	643.32	628.86	39.09	0.06
	Gene expression data from Aft red fruit peel	exocarp	3	3	409.35	358.52	110.18	0.27
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	392.37	379.90	33.48	0.09
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	315.63	321.23	63.92	0.20
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	143.37	149.44	109.15	0.76
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	116.40	116.40	0.26	0.00
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	151.79	144.33	40.76	0.27
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	152.17	152.17	132.98	0.87
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	337.21	393.34	127.38	0.38
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	896.42	896.42	358.81	0.40
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	1344.14	1344.14	132.56	0.10
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	985.99	361.71	1137.95	1.15
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1956.96	1733.71	685.67	0.35
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	621.96	596.60	159.46	0.26
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	121.72	122.91	12.66	0.10
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	97.12	97.12	52.35	0.54
	Gene expression data from Micro-Tom root	root	3	3	1977.04	1882.61	198.34	0.10

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	2712.09	2e-4	P
	GSM480171 extract 1	5355.83	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	246.803	2e-4	P
	GSM480205 extract 1	233.829	2e-4	P
	GSM480204 extract 1	210.535	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	389.958	2e-4	P
	GSM480214 extract 1	599.919	2e-4	P
	GSM480213 extract 1	418.92	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	86.8546	7e-4	P
	GSM480180 extract 1	201.993	2e-4	P
	GSM480182 extract 1	261.099	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	38.629	7e-4	P
	GSM480185 extract 1	72.4627	7e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	92.4911	2e-4	P
	GSM480188 extract 1	126.653	2e-4	P
	GSM480189 extract 1	92.8328	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	335.636	2e-4	P
	GSM480224 extract 1	316.756	2e-4	P
	GSM480225 extract 1	360.577	2e-4	P
	GSM480227 extract 1	199.138	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	687.589	2e-4	P
	GSM480206 extract 1	628.855	2e-4	P
	GSM480208 extract 1	613.532	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	535.763	2e-4	P
	GSM480209 extract 1	358.523	2e-4	P
	GSM480210 extract 1	333.759	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	430.295	2e-4	P
	GSM480218 extract 1	366.924	2e-4	P
	GSM480219 extract 1	379.901	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	376.574	2e-4	P
	GSM480221 extract 1	249.097	2e-4	P
	GSM480223 extract 1	321.23	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	31.3156	2e-4	P
	GSM480192 extract 1	149.442	2e-4	P
	GSM480190 extract 1	249.361	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	116.215	2e-4	P
	GSM480196 extract 1	116.584	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	115.278	2e-4	P
	GSM480199 extract 1	144.326	2e-4	P
	GSM480198 extract 1	195.772	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	246.206	2e-4	P
	GSM480194 extract 1	58.1419	7e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	409.18	2e-4	P
	GSM480229 extract 1	377.497	2e-4	P
	GSM480230 extract 1	414.454	2e-4	P
	GSM480231 extract 1	147.717	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	1150.14	2e-4	P
	GSM480168 extract 1	642.711	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	1437.87	2e-4	P
	GSM480173 extract 1	1250.4	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	2299.45	2e-4	P
	GSM480174 extract 1	361.709	2e-4	P
	GSM480175 extract 1	296.822	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	1410.73	2e-4	P
	GSM480177 extract 1	2726.43	2e-4	P
	GSM480178 extract 1	1733.71	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	792.587	2e-4	P
	GSM480200 extract 1	476.703	2e-4	P
	GSM480201 extract 1	596.598	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	122.907	2e-4	P
	GSM480216 extract 1	133.749	2e-4	P
	GSM480217 extract 1	108.505	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	134.141	2e-4	P
	GSM480184 extract 1	60.103	7e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	1882.61	2e-4	P
	GSM480166 extract 1	2204.95	2e-4	P
	GSM480165 extract 1	1843.55	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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