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Expression Template: LesAffx.62803.1.S1_at

Template Basic Information

Template name:	LesAffx.62803.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U577063
External db links:	GenBank: AW223168

Annotations for unigene SGN-U577063 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157354759\|emb\|CAO48077.1\|	227	8e-58	75.16	459 bp (61.0%)	1
Description:	unnamed
arabidopsis	blastx	At1G29040.1	220	6e-58	84.92	378 bp (50.3%)	1
Description:	similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar t&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.62803.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.62803.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.62803.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.62803.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.62803.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.62803.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.62803.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.62803.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.62803.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.62803.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.62803.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	1321.36	1321.36	220.62	0.17
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	1003.02	991.50	38.11	0.04
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	992.32	1015.53	52.60	0.05
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	751.90	809.67	128.39	0.17
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	1575.17	1368.07	437.39	0.28
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	671.01	642.56	57.63	0.09
	Gene expression data from Aft red fruit peel	exocarp	3	3	1808.56	1826.51	41.78	0.02
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	743.95	734.45	26.59	0.04
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1484.09	1479.36	47.12	0.03
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	626.34	606.37	34.92	0.06
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1907.56	1907.56	913.25	0.48
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1246.15	1313.43	211.99	0.17
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	2034.65	2034.65	360.48	0.18
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1991.52	1915.71	224.78	0.11
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	668.05	668.05	164.39	0.25
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	590.56	590.56	19.08	0.03
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	547.88	456.04	212.34	0.39
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	806.39	793.32	226.52	0.28
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	1474.67	1472.68	21.33	0.01
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	1135.90	1141.28	117.55	0.10
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	1305.28	1305.28	613.11	0.47
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	681.74	733.74	160.29	0.24
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	1403.26	1403.26	321.99	0.23
	Gene expression data from Micro-Tom root	root	3	3	392.34	387.22	14.15	0.04

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	1165.36	2e-4	P
	GSM480171 extract 1	1477.36	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	991.499	2e-4	P
	GSM480200 extract 1	1045.57	2e-4	P
	GSM480202 extract 1	972	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	1029.32	2e-4	P
	GSM480215 extract 1	1015.53	2e-4	P
	GSM480217 extract 1	932.105	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	809.673	2e-4	P
	GSM480180 extract 1	604.777	2e-4	P
	GSM480181 extract 1	841.26	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	1333.84	2e-4	P
	GSM480224 extract 1	1377.71	2e-4	P
	GSM480225 extract 1	1358.44	2e-4	P
	GSM480227 extract 1	2230.7	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	642.558	2e-4	P
	GSM480207 extract 1	633.14	2e-4	P
	GSM480208 extract 1	737.327	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	1760.8	2e-4	P
	GSM480210 extract 1	1838.37	2e-4	P
	GSM480211 extract 1	1826.51	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	723.402	2e-4	P
	GSM480219 extract 1	734.454	2e-4	P
	GSM480220 extract 1	773.982	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	1439.51	2e-4	P
	GSM480222 extract 1	1479.36	2e-4	P
	GSM480221 extract 1	1533.4	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	666.654	2e-4	P
	GSM480190 extract 1	606.366	2e-4	P
	GSM480191 extract 1	605.989	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	2553.33	2e-4	P
	GSM480195 extract 1	1261.8	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	1313.43	2e-4	P
	GSM480197 extract 1	1008.68	2e-4	P
	GSM480199 extract 1	1416.33	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	1779.75	2e-4	P
	GSM480194 extract 1	2289.55	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	1813.82	2e-4	P
	GSM480230 extract 1	1921.18	2e-4	P
	GSM480229 extract 1	1910.25	2e-4	P
	GSM480231 extract 1	2320.84	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	551.81	2e-4	P
	GSM480169 extract 1	784.287	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	577.069	2e-4	P
	GSM480173 extract 1	604.054	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	790.682	2e-4	P
	GSM480174 extract 1	456.039	2e-4	P
	GSM480175 extract 1	396.925	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	1039.16	2e-4	P
	GSM480179 extract 1	586.685	2e-4	P
	GSM480178 extract 1	793.319	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	1454.4	2e-4	P
	GSM480203 extract 1	1496.93	2e-4	P
	GSM480205 extract 1	1472.68	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	1250.66	2e-4	P
	GSM480214 extract 1	1015.75	2e-4	P
	GSM480213 extract 1	1141.28	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	871.748	2e-4	P
	GSM480186 extract 1	1738.81	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	501.906	2e-4	P
	GSM480189 extract 1	809.582	2e-4	P
	GSM480188 extract 1	733.74	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	1175.58	2e-4	P
	GSM480184 extract 1	1630.94	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	387.22	2e-4	P
	GSM480165 extract 1	408.347	2e-4	P
	GSM480166 extract 1	381.464	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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