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Expression Template: Les.494.3.S1_at

Template Basic Information

Template name:	Les.494.3.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U566414
External db links:	GenBank: BG124227

Annotations for unigene SGN-U566414 (manual: 1 | blast: 3 | go: 7 )

Manual annotations

Based on clone cLES-20-G18, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "proteasome, AAA-ATPase subunit 4" Annotation Keywords: protein degredation; proteasome

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|24745880\|dbj\|BAC23035.1\|	777		99.75	1194 bp (69.3%)	2
Description:	26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum] >gi76160929\|gb\|ABA40428.1\| 26S prot&hellip
arabidopsis	blastx	At1G45000.1	736		93.73	1194 bp (69.3%)	2
Description:	26S proteasome regulatory complex subunit p42D, putative \| chr1:17011660-17014047 FORWARD
swissprot	blastx	P62334	607	7e-173	78.27	1146 bp (66.5%)	2
Description:	26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1

GO Terms Annotations

GO:0005737cytoplasm
GO:0005524ATP binding
GO:0000166nucleotide binding
GO:0030163protein catabolism
GO:0017111nucleoside-triphosphatase activity
GO:0016787hydrolase activity
GO:0005634nucleus

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.494.3.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.494.3.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.494.3.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.494.3.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.494.3.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.494.3.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.494.3.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.494.3.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.494.3.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.494.3.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.494.3.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	713.06	713.06	110.69	0.16
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	1373.06	1416.31	78.80	0.06
	Gene expression data from Aft red fruit flesh	endocarp	3	3	2513.83	2449.03	120.45	0.05
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	2488.80	2494.76	102.98	0.04
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	1471.94	1471.94	102.62	0.07
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	884.13	867.50	32.55	0.04
	Gene expression data from Aft red fruit peel	exocarp	3	3	1480.96	1516.21	151.68	0.10
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	893.16	875.46	32.35	0.04
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	1164.27	1195.26	64.28	0.06
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1111.46	974.18	286.18	0.26
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1871.37	1871.37	125.92	0.07
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	2197.03	2186.53	172.90	0.08
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1746.43	1746.43	169.44	0.10
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1541.35	1465.34	203.96	0.13
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1094.33	1094.33	132.24	0.12
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	546.93	546.93	16.66	0.03
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	831.95	766.21	154.96	0.19
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	1019.55	1020.60	76.57	0.08
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	1062.20	1080.99	38.24	0.04
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	2260.63	2224.24	227.84	0.10
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	1316.24	1258.48	242.49	0.18
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	1851.58	1851.58	91.08	0.05
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	1454.35	1217.96	609.56	0.42
	Gene expression data from Micro-Tom root	root	3	3	1552.10	1549.80	44.44	0.03

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	634.785	2e-4	P
	GSM480171 extract 1	791.327	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	1416.31	2e-4	P
	GSM480202 extract 1	1282.11	2e-4	P
	GSM480201 extract 1	1420.76	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	2652.81	2e-4	P
	GSM480204 extract 1	2449.03	2e-4	P
	GSM480203 extract 1	2439.65	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	2494.76	2e-4	P
	GSM480187 extract 1	2588.67	2e-4	P
	GSM480188 extract 1	2382.96	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	1399.38	2e-4	P
	GSM480184 extract 1	1544.51	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	921.635	2e-4	P
	GSM480208 extract 1	863.265	2e-4	P
	GSM480207 extract 1	867.498	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	1516.21	2e-4	P
	GSM480209 extract 1	1611.91	2e-4	P
	GSM480210 extract 1	1314.75	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	873.513	2e-4	P
	GSM480220 extract 1	930.493	2e-4	P
	GSM480219 extract 1	875.459	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	1195.26	2e-4	P
	GSM480221 extract 1	1207.19	2e-4	P
	GSM480222 extract 1	1090.37	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	919.783	2e-4	P
	GSM480191 extract 1	1440.42	2e-4	P
	GSM480192 extract 1	974.176	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	1782.33	2e-4	P
	GSM480196 extract 1	1960.41	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	2186.53	2e-4	P
	GSM480198 extract 1	2029.61	2e-4	P
	GSM480199 extract 1	2374.94	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	1626.61	2e-4	P
	GSM480194 extract 1	1866.24	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	1473.72	2e-4	P
	GSM480230 extract 1	1456.96	2e-4	P
	GSM480229 extract 1	1392.04	2e-4	P
	GSM480231 extract 1	1842.7	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	1000.82	2e-4	P
	GSM480169 extract 1	1187.84	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	558.708	2e-4	P
	GSM480173 extract 1	535.147	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	1008.94	2e-4	P
	GSM480174 extract 1	766.212	2e-4	P
	GSM480175 extract 1	720.687	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	1095.6	2e-4	P
	GSM480177 extract 1	1020.6	2e-4	P
	GSM480179 extract 1	942.465	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	1018.2	2e-4	P
	GSM480212 extract 1	1080.99	2e-4	P
	GSM480213 extract 1	1087.41	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	2053.18	2e-4	P
	GSM480215 extract 1	2224.24	2e-4	P
	GSM480217 extract 1	2504.47	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	1258.48	2e-4	P
	GSM480181 extract 1	1582.39	2e-4	P
	GSM480182 extract 1	1107.84	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	1787.18	2e-4	P
	GSM480185 extract 1	1915.98	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	1282.44	2e-4	P
	GSM480225 extract 1	1026.34	2e-4	P
	GSM480226 extract 1	1153.48	2e-4	P
	GSM480227 extract 1	2355.14	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	1508.86	2e-4	P
	GSM480165 extract 1	1549.8	2e-4	P
	GSM480167 extract 1	1597.65	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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