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Expression Template: LesAffx.8142.1.S1_at

Template Basic Information

Template name:	LesAffx.8142.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U584349 SGN-U584349 SGN-U584349
External db links:	GenBank: AW219893

Annotations for unigene SGN-U584349 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147835139\|emb\|CAN76903.1\|	271	7e-71	75.9	498 bp (37.9%)	1
Description:	hypothetical
arabidopsis	blastx	At1G74520.1	246	2e-65	65.12	516 bp (39.2%)	1
Description:	Symbols: ATHVA22A \| ATHVA22A (Arabidopsis thaliana HVA22 homologue A) \| chr1:28011770-28012817&hellip
swissprot	blastx	Q9S7V4	246	2e-64	65.12	516 bp (39.2%)	1
Description:	HVA22-like protein a OS=Arabidopsis thaliana GN=HVA22A PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Annotations for unigene SGN-U584349 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147835139\|emb\|CAN76903.1\|	271	7e-71	75.9	498 bp (37.9%)	1
Description:	hypothetical
arabidopsis	blastx	At1G74520.1	246	2e-65	65.12	516 bp (39.2%)	1
Description:	Symbols: ATHVA22A \| ATHVA22A (Arabidopsis thaliana HVA22 homologue A) \| chr1:28011770-28012817&hellip
swissprot	blastx	Q9S7V4	246	2e-64	65.12	516 bp (39.2%)	1
Description:	HVA22-like protein a OS=Arabidopsis thaliana GN=HVA22A PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Annotations for unigene SGN-U584349 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147835139\|emb\|CAN76903.1\|	271	7e-71	75.9	498 bp (37.9%)	1
Description:	hypothetical
arabidopsis	blastx	At1G74520.1	246	2e-65	65.12	516 bp (39.2%)	1
Description:	Symbols: ATHVA22A \| ATHVA22A (Arabidopsis thaliana HVA22 homologue A) \| chr1:28011770-28012817&hellip
swissprot	blastx	Q9S7V4	246	2e-64	65.12	516 bp (39.2%)	1
Description:	HVA22-like protein a OS=Arabidopsis thaliana GN=HVA22A PE=2 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.8142.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.8142.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.8142.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.8142.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.8142.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.8142.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.8142.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.8142.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.8142.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.8142.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.8142.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	644.44	644.44	121.11	0.19
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	801.19	808.64	69.88	0.09
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	752.01	766.33	53.68	0.07
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	522.32	522.32	122.09	0.23
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	576.32	565.56	44.05	0.08
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	424.69	330.12	211.94	0.50
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1025.53	1021.78	81.06	0.08
	Gene expression data from Aft red fruit peel	exocarp	3	3	910.02	918.13	41.67	0.05
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	937.25	950.79	143.34	0.15
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	792.39	787.80	17.71	0.02
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	565.31	670.76	274.94	0.49
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	647.16	647.16	51.69	0.08
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	895.61	926.93	223.47	0.25
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	679.21	679.21	24.88	0.04
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	390.06	350.76	95.72	0.25
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	717.01	717.01	149.99	0.21
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	630.79	630.79	13.41	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	845.66	847.85	69.02	0.08
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	752.39	756.96	51.89	0.07
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	811.89	804.28	17.02	0.02
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	742.78	738.48	20.79	0.03
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	543.20	633.48	182.14	0.34
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	618.35	618.35	210.41	0.34
	Gene expression data from Micro-Tom root	root	3	3	744.25	722.13	41.49	0.06

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	558.803	2e-4	P
	GSM480171 extract 1	730.082	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	867.046	2e-4	P
	GSM480201 extract 1	808.641	2e-4	P
	GSM480202 extract 1	727.883	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	797.07	2e-4	P
	GSM480217 extract 1	692.624	2e-4	P
	GSM480216 extract 1	766.326	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	608.651	2e-4	P
	GSM480185 extract 1	435.996	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	538.645	2e-4	P
	GSM480189 extract 1	624.76	2e-4	P
	GSM480188 extract 1	565.561	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	298.303	2e-4	P
	GSM480224 extract 1	304.306	2e-4	P
	GSM480226 extract 1	355.924	2e-4	P
	GSM480227 extract 1	740.222	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	946.414	2e-4	P
	GSM480208 extract 1	1108.4	2e-4	P
	GSM480207 extract 1	1021.78	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	947.035	2e-4	P
	GSM480210 extract 1	864.888	2e-4	P
	GSM480211 extract 1	918.134	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	950.791	2e-4	P
	GSM480219 extract 1	1073.34	2e-4	P
	GSM480220 extract 1	787.616	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	787.795	2e-4	P
	GSM480222 extract 1	777.438	2e-4	P
	GSM480223 extract 1	811.944	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	670.759	2e-4	P
	GSM480191 extract 1	771.908	2e-4	P
	GSM480190 extract 1	253.25	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	610.609	2e-4	P
	GSM480196 extract 1	683.71	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	1101.77	2e-4	P
	GSM480197 extract 1	658.128	2e-4	P
	GSM480198 extract 1	926.927	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	661.619	2e-4	P
	GSM480194 extract 1	696.806	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	349.457	2e-4	P
	GSM480228 extract 1	352.068	2e-4	P
	GSM480230 extract 1	326.157	2e-4	P
	GSM480231 extract 1	532.575	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	610.953	2e-4	P
	GSM480169 extract 1	823.067	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	621.311	2e-4	P
	GSM480173 extract 1	640.274	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	775.56	2e-4	P
	GSM480174 extract 1	913.552	2e-4	P
	GSM480175 extract 1	847.853	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	698.361	2e-4	P
	GSM480179 extract 1	756.957	2e-4	P
	GSM480177 extract 1	801.846	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	800.004	2e-4	P
	GSM480203 extract 1	804.276	2e-4	P
	GSM480205 extract 1	831.385	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	724.468	2e-4	P
	GSM480212 extract 1	738.475	2e-4	P
	GSM480213 extract 1	765.382	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	633.48	2e-4	P
	GSM480180 extract 1	333.547	2e-4	P
	GSM480181 extract 1	662.563	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	469.568	2e-4	P
	GSM480184 extract 1	767.127	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	718.512	2e-4	P
	GSM480167 extract 1	792.116	2e-4	P
	GSM480166 extract 1	722.126	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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