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Expression Template: LesAffx.55639.1.S1_at

Template Basic Information

Template name:	LesAffx.55639.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U566438
External db links:	GenBank: BI210492

Annotations for unigene SGN-U566438 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157334842\|emb\|CAO70855.1\|	105	2e-21	68.54	267 bp (46.6%)	1
Description:	unnamed
arabidopsis	blastx	At2G15000.5	92	2e-19	69.57	204 bp (35.6%)	1
Description:	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G34265.2) \| chr2:6488921-6489398 REVERSE
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.55639.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.55639.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.55639.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.55639.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.55639.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.55639.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.55639.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.55639.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.55639.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.55639.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.55639.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	518.89	518.89	26.95	0.05
	Gene expression data from Aft red fruit flesh	endocarp	3	3	634.36	621.13	57.91	0.09
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	614.75	614.75	14.55	0.02
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	518.94	517.51	34.33	0.07
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	299.98	297.79	12.97	0.04
	Gene expression data from Aft red fruit peel	exocarp	3	3	531.37	540.47	17.16	0.03
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	293.07	294.98	7.49	0.03
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	332.04	344.84	26.90	0.08
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	840.91	899.20	250.14	0.30
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	545.88	545.88	9.19	0.02
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	635.16	688.59	114.83	0.18
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	536.42	536.42	51.82	0.10
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	495.56	489.96	51.62	0.10
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	638.15	638.15	26.46	0.04
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	400.01	400.01	7.13	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	479.97	472.86	32.42	0.07
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	607.24	668.58	156.73	0.26
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	248.12	254.29	42.15	0.17
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	218.18	217.07	12.99	0.06
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	364.33	360.99	9.63	0.03
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	629.56	712.03	212.24	0.34
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	573.31	573.31	119.48	0.21
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	625.10	616.97	64.56	0.10
	Gene expression data from Micro-Tom root	root	3	3	1268.89	1317.68	101.47	0.08

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	499.837	2e-4	P
	GSM480170 extract 1	537.947	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	621.126	2e-4	P
	GSM480205 extract 1	697.732	2e-4	P
	GSM480204 extract 1	584.207	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	625.038	2e-4	P
	GSM480184 extract 1	604.463	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	478.451	2e-4	P
	GSM480224 extract 1	520.073	2e-4	P
	GSM480226 extract 1	562.277	2e-4	P
	GSM480227 extract 1	514.942	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	288.257	2e-4	P
	GSM480207 extract 1	313.909	2e-4	P
	GSM480208 extract 1	297.789	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	540.469	2e-4	P
	GSM480210 extract 1	511.574	2e-4	P
	GSM480211 extract 1	542.074	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	294.982	2e-4	P
	GSM480218 extract 1	284.809	2e-4	P
	GSM480219 extract 1	299.43	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	350.142	2e-4	P
	GSM480221 extract 1	301.126	2e-4	P
	GSM480223 extract 1	344.837	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	1056.76	2e-4	P
	GSM480190 extract 1	566.779	2e-4	P
	GSM480192 extract 1	899.199	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	539.382	2e-4	P
	GSM480196 extract 1	552.375	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	713.527	2e-4	P
	GSM480199 extract 1	688.592	2e-4	P
	GSM480197 extract 1	503.352	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	499.78	2e-4	P
	GSM480194 extract 1	573.068	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	559.304	2e-4	P
	GSM480228 extract 1	466.447	2e-4	P
	GSM480229 extract 1	513.464	2e-4	P
	GSM480230 extract 1	443.006	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	656.86	2e-4	P
	GSM480169 extract 1	619.445	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	405.048	2e-4	P
	GSM480172 extract 1	394.969	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	472.859	2e-4	P
	GSM480176 extract 1	451.689	2e-4	P
	GSM480175 extract 1	515.354	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	724.019	2e-4	P
	GSM480177 extract 1	429.107	2e-4	P
	GSM480179 extract 1	668.582	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	286.849	2e-4	P
	GSM480200 extract 1	254.291	2e-4	P
	GSM480202 extract 1	203.235	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	217.072	2e-4	P
	GSM480214 extract 1	231.697	2e-4	P
	GSM480213 extract 1	205.784	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	360.989	2e-4	P
	GSM480215 extract 1	356.817	2e-4	P
	GSM480216 extract 1	375.187	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	388.462	2e-4	P
	GSM480181 extract 1	712.032	2e-4	P
	GSM480182 extract 1	788.173	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	657.799	2e-4	P
	GSM480186 extract 1	488.824	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	564.985	2e-4	P
	GSM480188 extract 1	616.974	2e-4	P
	GSM480189 extract 1	693.329	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	1336.75	2e-4	P
	GSM480165 extract 1	1317.68	2e-4	P
	GSM480167 extract 1	1152.25	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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