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Expression Template: LesAffx.54488.1.S1_at

Template Basic Information

Template name:	LesAffx.54488.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U583672
External db links:	GenBank: BE458727

Annotations for unigene SGN-U583672 (manual: 2 | blast: 3 | go: 3 )

Manual annotations

Based on clone cLEC-23-D11, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: monodehydroascorbate reductase Annotation Keywords: other; oxygen and radical metabolism; antioxidant metabolism; vitamin C biosynthesis; ascorbic acid biosynthesis; fruit quality

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|195542238\|gb\|AAZ66138.2\|	860	100	1446 bp (71.4%)	2
Description:	monodehydroascorbate reductase [Solanum lycopersicum]
arabidopsis	blastx	At1G63940.2	707	76.84	1458 bp (72.0%)	2
Description:	monodehydroascorbate reductase, putative \| chr1:23733758-23737197 FORWARD
swissprot	blastx	P92947	707	76.84	1458 bp (72.0%)	2
Description:	Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3

GO Terms Annotations

GO:0015036disulfide oxidoreductase activity
GO:0016491oxidoreductase activity
GO:0006118electron transport

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.54488.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.54488.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.54488.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.54488.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.54488.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.54488.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.54488.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.54488.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.54488.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.54488.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.54488.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	466.68	466.68	125.29	0.27
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	195.42	203.62	20.46	0.10
	Gene expression data from Aft red fruit flesh	endocarp	3	3	261.84	251.77	23.30	0.09
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	142.08	142.74	14.43	0.10
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	257.83	266.34	17.30	0.07
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	223.18	254.27	74.44	0.33
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	158.78	157.27	25.29	0.16
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	120.74	96.45	63.57	0.53
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	107.90	114.19	10.94	0.10
	Gene expression data from Aft red fruit peel	exocarp	3	3	170.48	172.70	11.36	0.07
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	135.75	139.62	10.16	0.07
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	82.69	79.66	7.37	0.09
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	170.54	138.23	68.19	0.40
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	310.80	310.80	11.43	0.04
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	150.62	145.17	14.82	0.10
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	267.77	267.77	14.04	0.05
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	138.12	128.24	37.55	0.27
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	866.69	866.69	57.39	0.07
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	105.78	105.78	2.34	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	139.49	128.37	40.29	0.29
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	226.82	221.70	22.77	0.10
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	292.70	292.70	66.86	0.23
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	248.36	248.36	10.36	0.04
	Gene expression data from Micro-Tom root	root	3	3	731.55	733.76	21.55	0.03

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	378.082	2e-4	P
	GSM480171 extract 1	555.274	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	210.515	7e-4	P
	GSM480200 extract 1	203.624	7e-4	P
	GSM480202 extract 1	172.136	7e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	245.277	2e-4	P
	GSM480203 extract 1	251.766	2e-4	P
	GSM480205 extract 1	288.492	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	142.738	7e-4	P
	GSM480212 extract 1	156.165	7e-4	P
	GSM480214 extract 1	127.332	7e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	237.92	2e-4	P
	GSM480215 extract 1	269.23	2e-4	P
	GSM480217 extract 1	266.338	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	138.231	2e-4	P
	GSM480180 extract 1	254.267	2e-4	P
	GSM480181 extract 1	277.036	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	184.789	2e-4	P
	GSM480188 extract 1	134.272	2e-4	P
	GSM480189 extract 1	157.273	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480227 extract 1	214.156	2e-4	P
	GSM480224 extract 1	106.617	7e-4	P
	GSM480225 extract 1	75.9261	7e-4	P
	GSM480226 extract 1	86.2815	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	114.245	7e-4	P
	GSM480207 extract 1	95.2752	7e-4	P
	GSM480208 extract 1	114.193	7e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	172.699	2e-4	P
	GSM480210 extract 1	180.556	2e-4	P
	GSM480211 extract 1	158.169	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480220 extract 1	139.624	7e-4	P
	GSM480218 extract 1	124.224	7e-4	P
	GSM480219 extract 1	143.415	7e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	91.0969	2e-4	P
	GSM480223 extract 1	77.3098	2e-4	P
	GSM480222 extract 1	79.6641	7e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	124.508	7e-4	P
	GSM480191 extract 1	248.881	2e-4	P
	GSM480192 extract 1	138.23	7e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	302.719	2e-4	P
	GSM480196 extract 1	318.888	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	167.4	2e-4	P
	GSM480197 extract 1	139.3	2e-4	P
	GSM480198 extract 1	145.173	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	257.838	2e-4	P
	GSM480194 extract 1	277.7	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	129.501	2e-4	P
	GSM480230 extract 1	126.988	7e-4	P
	GSM480229 extract 1	104.197	7e-4	P
	GSM480231 extract 1	191.793	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	907.272	2e-4	P
	GSM480169 extract 1	826.116	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	104.126	7e-4	P
	GSM480173 extract 1	107.433	7e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	184.162	7e-4	P
	GSM480174 extract 1	128.372	7e-4	P
	GSM480175 extract 1	105.925	7e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	251.712	2e-4	P
	GSM480177 extract 1	221.7	2e-4	P
	GSM480179 extract 1	207.037	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	339.981	2e-4	P
	GSM480186 extract 1	245.429	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	241.028	2e-4	P
	GSM480184 extract 1	255.682	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	708.972	2e-4	P
	GSM480166 extract 1	751.906	2e-4	P
	GSM480167 extract 1	733.764	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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