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Expression Template: LesAffx.10314.1.S1_at

Template Basic Information

Template name:	LesAffx.10314.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U578543
External db links:	GenBank: BG125822

Annotations for unigene SGN-U578543 (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15234797\|ref\|NP_194791.1\|	210	2e-52	80.43	414 bp (27.6%)	2
Description:	unknown protein [Arabidopsis thaliana] >gi7269963\|emb\|CAB79780.1\| putative protein [Arabidopsis&hellip
arabidopsis	blastx	At4G30620.1	210	2e-54	80.43	414 bp (27.6%)	2
Description:	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24020.1); similar to Conserved hyp&hellip
swissprot	blastx	Q5N376	89	7e-17	48.54	309 bp (20.6%)	2
Description:	UPF0133 protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=&hellip

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.10314.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.10314.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.10314.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.10314.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.10314.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.10314.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.10314.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.10314.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.10314.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.10314.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.10314.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	874.24	874.24	21.38	0.02
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	2408.50	2458.94	220.50	0.09
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	468.56	468.56	296.74	0.63
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	648.14	607.98	110.16	0.17
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1649.85	1768.04	239.14	0.14
	Gene expression data from Aft red fruit peel	exocarp	3	3	596.07	613.66	38.78	0.07
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1516.22	1521.02	102.09	0.07
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	627.60	594.60	63.91	0.10
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1360.52	1235.89	297.74	0.22
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	331.27	331.27	152.34	0.46
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	491.96	522.41	173.22	0.35
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	465.88	465.88	109.92	0.24
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	401.39	392.53	41.22	0.10
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1223.96	1223.96	285.86	0.23
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	849.43	849.43	19.57	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	1073.81	1103.00	100.34	0.09
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	956.99	929.58	49.59	0.05
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	2433.44	2487.36	161.52	0.07
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	880.14	888.31	41.70	0.05
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	539.85	533.66	24.51	0.05
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	1431.78	1305.61	625.70	0.44
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	576.55	620.73	90.43	0.16
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	655.75	655.75	495.79	0.76
	Gene expression data from Micro-Tom root	root	3	3	1242.65	1188.06	117.21	0.09

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	859.122	2e-4	P
	GSM480171 extract 1	889.358	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	2599.42	2e-4	P
	GSM480213 extract 1	2458.94	2e-4	P
	GSM480214 extract 1	2167.15	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	258.741	2e-4	P
	GSM480186 extract 1	678.388	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	607.627	2e-4	P
	GSM480224 extract 1	608.326	2e-4	P
	GSM480225 extract 1	565.94	2e-4	P
	GSM480227 extract 1	810.686	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	1374.63	2e-4	P
	GSM480206 extract 1	1768.04	2e-4	P
	GSM480208 extract 1	1806.88	2e-4	P
Gene expression data from Aft red fruit peel	GSM480211 extract 1	622.931	2e-4	P
	GSM480209 extract 1	551.614	2e-4	P
	GSM480210 extract 1	613.655	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	1411.81	2e-4	P
	GSM480218 extract 1	1521.02	2e-4	P
	GSM480220 extract 1	1615.83	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	586.926	2e-4	P
	GSM480222 extract 1	594.605	2e-4	P
	GSM480223 extract 1	701.265	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	1145.34	2e-4	P
	GSM480190 extract 1	1235.89	2e-4	P
	GSM480192 extract 1	1700.32	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	223.548	2e-4	P
	GSM480196 extract 1	438.987	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	305.537	2e-4	P
	GSM480198 extract 1	522.406	2e-4	P
	GSM480199 extract 1	647.945	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	388.157	2e-4	P
	GSM480194 extract 1	543.61	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	459.044	2e-4	P
	GSM480228 extract 1	395.908	2e-4	P
	GSM480230 extract 1	389.156	2e-4	P
	GSM480229 extract 1	361.468	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	1021.83	2e-4	P
	GSM480169 extract 1	1426.1	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	835.593	2e-4	P
	GSM480173 extract 1	863.266	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	1103	2e-4	P
	GSM480175 extract 1	1156.31	2e-4	P
	GSM480176 extract 1	962.111	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	1014.24	2e-4	P
	GSM480178 extract 1	929.576	2e-4	P
	GSM480179 extract 1	927.159	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	2561.1	2e-4	P
	GSM480201 extract 1	2251.85	2e-4	P
	GSM480202 extract 1	2487.36	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	834.958	2e-4	P
	GSM480205 extract 1	888.314	2e-4	P
	GSM480204 extract 1	917.148	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	533.658	2e-4	P
	GSM480216 extract 1	566.869	2e-4	P
	GSM480217 extract 1	519.027	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	878.79	2e-4	P
	GSM480182 extract 1	2110.95	2e-4	P
	GSM480181 extract 1	1305.61	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	472.523	2e-4	P
	GSM480188 extract 1	636.409	2e-4	P
	GSM480189 extract 1	620.729	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	305.175	2e-4	P
	GSM480184 extract 1	1006.33	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	1377.2	2e-4	P
	GSM480167 extract 1	1162.7	2e-4	P
	GSM480165 extract 1	1188.06	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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