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Expression Template: Les.2881.3.S1_at

Template Basic Information

Template name:	Les.2881.3.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U580720
External db links:	GenBank: BM409080

Annotations for unigene SGN-U580720 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLER-19-P2, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: ribosomal protein L17 Annotation Keywords: protein biosynthesis; ribosome complex

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|57471720\|gb\|AAW50991.1\|	284	4e-75	100	420 bp (66.8%)	1
Description:	ribosomal
arabidopsis	blastx	At3G04400.1	280	4e-76	97.86	420 bp (66.8%)	1
Description:	Symbols: EMB2171 \| EMB2171 (EMBRYO DEFECTIVE 2171); structural constituent of ribosome \| chr3:&hellip
swissprot	blastx	P49690	280	3e-75	97.86	420 bp (66.8%)	1
Description:	60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.2881.3.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.2881.3.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.2881.3.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.2881.3.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.2881.3.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.2881.3.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.2881.3.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.2881.3.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.2881.3.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.2881.3.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.2881.3.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	69.39	69.39	49.73	0.72
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	57.82	56.52	3.30	0.06
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	50.72	48.26	4.64	0.09
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	61.26	61.89	5.80	0.09
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	61.29	61.29	32.26	0.53
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	47.89	47.89	0.60	0.01
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	47.84	41.37	29.78	0.62
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	69.19	68.36	1.79	0.03
	Gene expression data from Aft red fruit peel	exocarp	3	3	57.04	54.67	4.92	0.09
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	46.15	47.32	7.58	0.16
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	57.49	52.80	10.98	0.19
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	84.03	90.10	15.80	0.19
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	51.95	51.95	2.67	0.05
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	36.63	32.08	12.79	0.35
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	56.29	56.29	24.37	0.43
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	35.10	36.67	9.71	0.28
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	71.38	71.38	42.59	0.60
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	40.19	40.19	6.27	0.16
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	31.62	35.12	9.32	0.29
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	39.12	42.31	6.21	0.16
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	74.69	85.33	23.07	0.31
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	39.89	48.39	15.22	0.38
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	48.74	51.11	5.67	0.12
	Gene expression data from Micro-Tom root	root	3	3	107.53	106.56	11.65	0.11

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	34.2183	0.006	P
	GSM480170 extract 1	104.553	7e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	55.3737	7e-4	P
	GSM480214 extract 1	56.5167	0.002	P
	GSM480212 extract 1	61.5775	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	47.8246	0.004	P
	GSM480217 extract 1	48.2625	2e-4	P
	GSM480215 extract 1	56.0708	7e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	61.8851	7e-4	P
	GSM480181 extract 1	66.7257	0.001	P
	GSM480180 extract 1	55.1811	7e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	38.4816	0.014	P
	GSM480186 extract 1	84.1001	7e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	48.3112	0.003	P
	GSM480184 extract 1	47.4636	0.001	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	89.5631	2e-4	P
	GSM480224 extract 1	43.5079	0.003	P
	GSM480227 extract 1	19.0686	0.011	P
	GSM480226 extract 1	39.2401	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480208 extract 1	68.364	2e-4	P
	GSM480206 extract 1	67.9694	7e-4	P
	GSM480207 extract 1	71.2451	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	54.6743	0.004	P
	GSM480210 extract 1	62.7015	0.003	P
	GSM480211 extract 1	53.7514	0.001	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	38.0514	7e-4	P
	GSM480218 extract 1	47.3194	0.002	P
	GSM480220 extract 1	53.0798	0.001	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	70.0276	0.002	P
	GSM480221 extract 1	49.6293	0.006	P
	GSM480222 extract 1	52.8036	7e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	90.0951	2e-4	P
	GSM480190 extract 1	66.092	0.002	P
	GSM480192 extract 1	95.9015	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	53.8355	0.005	P
	GSM480196 extract 1	50.0578	0.003	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	26.7423	7e-4	P
	GSM480197 extract 1	51.0803	0.002	P
	GSM480199 extract 1	32.0795	0.003	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	73.5234	0.001	P
	GSM480194 extract 1	39.0556	0.006	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	41.6613	0.010	P
	GSM480229 extract 1	31.6808	0.038	P
	GSM480230 extract 1	22.9728	2e-4	P
	GSM480231 extract 1	44.1053	0.008	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	101.499	2e-4	P
	GSM480169 extract 1	41.2694	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	44.6197	0.003	P
	GSM480173 extract 1	35.7557	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	21.0634	0.001	P
	GSM480176 extract 1	35.1239	0.030	P
	GSM480175 extract 1	38.6876	0.008	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	42.3138	7e-4	P
	GSM480177 extract 1	31.9597	0.002	P
	GSM480178 extract 1	43.0909	0.002	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	48.2244	2e-4	P
	GSM480201 extract 1	90.5116	0.002	P
	GSM480202 extract 1	85.3348	0.001	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	22.3155	7e-4	P
	GSM480203 extract 1	48.3928	2e-4	P
	GSM480205 extract 1	48.9519	0.006	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	51.1143	2e-4	P
	GSM480188 extract 1	52.8236	7e-4	P
	GSM480189 extract 1	42.2677	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	119.634	7e-4	P
	GSM480165 extract 1	106.564	2e-4	P
	GSM480167 extract 1	96.3849	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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