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Expression Template: LesAffx.13683.2.S1_at

Template Basic Information

Template name:	LesAffx.13683.2.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U572389
External db links:	GenBank: BE461737

Annotations for unigene SGN-U572389 (manual: 1 | blast: 3 | go: 0 )

Manual annotations

Based on clone cLEC-6-A15, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: AMP-binding protein Annotation Keywords: other; nucleotide binding protein

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157352996\|emb\|CAO44886.1\|	936		77.94	1686 bp (81.6%)	2
Description:	unnamed
arabidopsis	blastx	At3G16910.1	872		73.84	1674 bp (81.0%)	2
Description:	Symbols: AAE7, ACN1 \| AAE7/ACN1 (ACYL-ACTIVATING ENZYME 7); AMP binding / acetate-CoA ligase \|&hellip
swissprot	blastx	Q00594	209	5e-53	30.35	1596 bp (77.3%)	2
Description:	Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas oleovorans GN=alkK PE=3 SV=1

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.13683.2.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.13683.2.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.13683.2.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.13683.2.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.13683.2.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.13683.2.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.13683.2.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.13683.2.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.13683.2.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.13683.2.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.13683.2.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	26.30	26.30	7.74	0.29
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	1090.35	1174.73	164.54	0.15
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	986.59	974.38	66.57	0.07
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	770.38	739.42	262.16	0.34
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	1332.91	1332.91	189.55	0.14
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	1235.97	1235.97	245.47	0.20
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	668.03	642.10	59.35	0.09
	Gene expression data from Aft red fruit peel	exocarp	3	3	648.81	648.13	56.53	0.09
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1031.63	1019.82	38.60	0.04
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	666.42	678.03	25.31	0.04
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	529.28	428.97	251.58	0.48
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1364.67	1364.67	29.13	0.02
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	949.18	1012.01	127.04	0.13
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1036.05	1036.05	86.15	0.08
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	366.24	176.30	409.92	1.12
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	95.33	95.33	37.02	0.39
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	10.75	10.75	12.36	1.15
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	13.94	14.40	1.72	0.12
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	9.71	13.10	7.82	0.81
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	1303.50	1290.95	39.77	0.03
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	1902.46	1985.29	159.80	0.08
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	778.54	807.81	74.98	0.10
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	376.74	158.06	479.01	1.27
	Gene expression data from Micro-Tom root	root	3	3	26.40	28.23	5.49	0.21

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	20.8274	0.014	P
	GSM480171 extract 1	31.7717	0.003	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	1195.59	2e-4	P
	GSM480202 extract 1	900.741	2e-4	P
	GSM480201 extract 1	1174.73	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	974.378	2e-4	P
	GSM480212 extract 1	926.974	2e-4	P
	GSM480213 extract 1	1058.43	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	525.083	2e-4	P
	GSM480181 extract 1	1046.65	2e-4	P
	GSM480182 extract 1	739.423	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	1198.88	2e-4	P
	GSM480186 extract 1	1466.94	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	1062.4	2e-4	P
	GSM480184 extract 1	1409.55	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	626.062	2e-4	P
	GSM480206 extract 1	642.096	2e-4	P
	GSM480208 extract 1	735.926	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	592.629	2e-4	P
	GSM480209 extract 1	705.683	2e-4	P
	GSM480211 extract 1	648.127	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	1019.82	2e-4	P
	GSM480218 extract 1	1074.76	2e-4	P
	GSM480220 extract 1	1000.31	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	678.028	2e-4	P
	GSM480223 extract 1	683.849	2e-4	P
	GSM480222 extract 1	637.385	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	428.973	2e-4	P
	GSM480190 extract 1	343.339	2e-4	P
	GSM480191 extract 1	815.544	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	1344.07	2e-4	P
	GSM480195 extract 1	1385.27	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	1032.56	2e-4	P
	GSM480197 extract 1	1012.01	2e-4	P
	GSM480198 extract 1	802.96	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	1096.96	2e-4	P
	GSM480193 extract 1	975.131	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	172.192	2e-4	P
	GSM480228 extract 1	180.405	2e-4	P
	GSM480229 extract 1	132.053	2e-4	P
	GSM480231 extract 1	980.293	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	69.1514	2e-4	P
	GSM480169 extract 1	121.509	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	19.4946	0.011	P
	GSM480173 extract 1	2.00916	0.246	A
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	15.3805	0.274	A
	GSM480175 extract 1	12.0407	0.095	A
	GSM480176 extract 1	14.3994	0.130	A
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480178 extract 1	0.770101	0.601	A
	GSM480177 extract 1	15.2665	0.002	P
	GSM480179 extract 1	13.0953	0.095	A
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	1271.52	2e-4	P
	GSM480204 extract 1	1290.95	2e-4	P
	GSM480205 extract 1	1348.03	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	1985.29	2e-4	P
	GSM480215 extract 1	2003.83	2e-4	P
	GSM480216 extract 1	1718.25	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	693.34	2e-4	P
	GSM480188 extract 1	807.81	2e-4	P
	GSM480189 extract 1	834.478	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	168.921	2e-4	P
	GSM480225 extract 1	96.9952	2e-4	P
	GSM480227 extract 1	1093.83	2e-4	P
	GSM480226 extract 1	147.204	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	28.23	2e-4	P
	GSM480165 extract 1	20.2311	0.006	P
	GSM480167 extract 1	30.7534	7e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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