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Expression Template: Les.3065.1.S1_at

Template Basic Information

Template name:	Les.3065.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U570030
External db links:	GenBank: BI929558

Annotations for unigene SGN-U570030 (manual: 0 | blast: 3 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|111183167\|gb\|ABH07904.1\|	179	2e-43	70.9	396 bp (40.1%)	1
Description:	squamosa promoter binding-like protein [Solanum lycopersicum]
arabidopsis	blastx	At2G33810.1	139	3e-33	79.49	234 bp (23.7%)	1
Description:	Symbols: SPL3 \| SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3); transcription factor \| chr2:1&hellip
swissprot	blastx	Q38741	157	7e-38	62.12	384 bp (38.9%)	1
Description:	Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1

GO Terms Annotations

GO:0005634nucleus
GO:0003677DNA binding

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.3065.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.3065.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.3065.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.3065.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.3065.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.3065.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.3065.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.3065.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.3065.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.3065.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.3065.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	39.72	39.72	11.93	0.30
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	262.89	233.91	63.54	0.24
	Gene expression data from Aft red fruit flesh	endocarp	3	3	40.82	39.19	9.55	0.23
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	5.47	3.41	5.37	0.98
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	144.92	139.94	29.56	0.20
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	253.74	268.38	28.55	0.11
	Gene expression data from Aft red fruit peel	exocarp	3	3	2.14	0.76	2.53	1.18
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	236.62	231.13	41.52	0.18
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	2.08	1.71	1.43	0.69
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	27.54	27.35	5.41	0.20
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	1.22	1.22	0.40	0.33
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	2.96	1.02	3.91	1.32
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	1.96	1.96	1.55	0.79
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	2.43	1.20	2.73	1.13
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	8.17	8.17	2.48	0.30
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	142.78	142.78	18.31	0.13
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	60.99	48.50	37.99	0.62
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	87.17	92.84	15.89	0.18
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	183.44	165.39	46.54	0.25
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	111.38	111.38	10.67	0.10
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	69.00	63.08	19.83	0.29
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	166.50	166.50	80.48	0.48
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	21.96	15.75	19.86	0.90
	Gene expression data from Micro-Tom root	root	3	3	3.35	2.03	3.50	1.05

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	31.2845	0.011	P
	GSM480171 extract 1	48.1578	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	233.908	2e-4	P
	GSM480200 extract 1	335.753	2e-4	P
	GSM480201 extract 1	218.998	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	32.1869	0.008	P
	GSM480203 extract 1	39.1903	0.001	P
	GSM480205 extract 1	51.0847	0.006	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	11.5625	0.081	A
	GSM480216 extract 1	3.41311	0.666	A
	GSM480217 extract 1	1.43301	0.568	A
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	139.936	2e-4	P
	GSM480180 extract 1	118.181	2e-4	P
	GSM480182 extract 1	176.657	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	271.99	2e-4	P
	GSM480206 extract 1	268.38	2e-4	P
	GSM480208 extract 1	220.838	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	5.06599	0.130	A
	GSM480210 extract 1	0.608091	0.754	A
	GSM480211 extract 1	0.756234	0.829	A
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	231.129	2e-4	P
	GSM480219 extract 1	280.602	2e-4	P
	GSM480220 extract 1	198.113	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	0.86879	0.994	A
	GSM480222 extract 1	1.71249	0.601	A
	GSM480223 extract 1	3.65872	0.568	A
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	33.0524	2e-4	P
	GSM480191 extract 1	22.2317	0.046	P
	GSM480192 extract 1	27.3481	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	1.50233	0.805	A
	GSM480196 extract 1	0.939712	0.905	A
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	1.0228	0.850	A
	GSM480199 extract 1	0.393795	0.981	A
	GSM480198 extract 1	7.46023	0.466	A
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	3.05351	0.666	A
	GSM480193 extract 1	0.866994	0.634	A
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	6.51606	0.500	A
	GSM480229 extract 1	0.780377	0.980	A
	GSM480230 extract 1	1.27228	0.805	A
	GSM480231 extract 1	1.13341	0.805	A
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	9.92267	0.150	A
	GSM480168 extract 1	6.40941	0.500	A
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	129.834	2e-4	P
	GSM480173 extract 1	155.724	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	48.4993	0.001	P
	GSM480175 extract 1	30.8191	2e-4	P
	GSM480176 extract 1	103.646	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	92.8413	2e-4	P
	GSM480177 extract 1	69.2138	2e-4	P
	GSM480178 extract 1	99.4417	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	148.629	2e-4	P
	GSM480212 extract 1	236.296	2e-4	P
	GSM480214 extract 1	165.386	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	118.927	2e-4	P
	GSM480185 extract 1	103.837	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	63.0821	2e-4	P
	GSM480187 extract 1	52.8106	0.002	P
	GSM480188 extract 1	91.1179	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	109.593	2e-4	P
	GSM480184 extract 1	223.406	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480227 extract 1	50.7909	2e-4	P
	GSM480226 extract 1	5.5482	0.266	A
	GSM480224 extract 1	17.3788	0.304	A
	GSM480225 extract 1	14.1129	0.038	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	0.6967	0.805	A
	GSM480166 extract 1	2.03314	0.666	A
	GSM480167 extract 1	7.31547	0.195	A

Correlation analysis (0)

No correlation analysis was found associated to this template

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