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Expression Template: LesAffx.59878.1.S1_at

Template Basic Information

Template name:	LesAffx.59878.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U581399
External db links:	GenBank: BE459230

Annotations for unigene SGN-U581399 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|118488461\|gb\|ABK96045.1\|	415	6e-114	68.69	984 bp (64.9%)	3
Description:	unknown
arabidopsis	blastx	At1G16520.1	354	9e-98	62.92	984 bp (64.9%)	3
Description:	similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G56080.1); similar to putative prot&hellip
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.59878.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.59878.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.59878.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.59878.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.59878.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.59878.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.59878.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.59878.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.59878.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.59878.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.59878.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	61.03	61.03	1.23	0.02
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	189.52	192.71	22.68	0.12
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	138.71	143.62	12.92	0.09
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	90.61	93.57	10.14	0.11
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	106.20	106.20	12.03	0.11
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	102.96	105.92	11.06	0.11
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	152.47	165.26	24.22	0.16
	Gene expression data from Aft red fruit peel	exocarp	3	3	149.45	147.97	20.68	0.14
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	140.71	140.29	7.89	0.06
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	110.20	110.06	0.55	0.01
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	121.92	99.71	55.31	0.45
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	141.04	141.04	19.61	0.14
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	142.57	134.96	22.71	0.16
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	85.50	85.50	12.01	0.14
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	146.20	149.56	25.43	0.17
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	200.03	200.03	3.82	0.02
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	44.44	44.44	10.55	0.24
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	40.02	36.11	9.69	0.24
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	41.46	41.11	4.64	0.11
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	163.30	163.56	13.62	0.08
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	167.95	190.22	38.62	0.23
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	63.89	63.89	12.84	0.20
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	136.13	127.17	24.21	0.18
	Gene expression data from Micro-Tom root	root	3	3	269.06	267.90	6.93	0.03

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	60.1587	0.001	P
	GSM480171 extract 1	61.8987	7e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	192.712	2e-4	P
	GSM480200 extract 1	165.411	2e-4	P
	GSM480202 extract 1	210.427	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	124.045	2e-4	P
	GSM480212 extract 1	143.62	2e-4	P
	GSM480214 extract 1	148.452	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	93.5681	2e-4	P
	GSM480180 extract 1	79.3212	2e-4	P
	GSM480182 extract 1	98.9504	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	97.6963	0.001	P
	GSM480186 extract 1	114.705	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	90.7201	2e-4	P
	GSM480189 extract 1	105.925	2e-4	P
	GSM480188 extract 1	112.241	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	124.53	2e-4	P
	GSM480207 extract 1	165.257	2e-4	P
	GSM480208 extract 1	167.612	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	129.546	2e-4	P
	GSM480211 extract 1	147.973	2e-4	P
	GSM480210 extract 1	170.828	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	133.044	2e-4	P
	GSM480218 extract 1	148.8	2e-4	P
	GSM480220 extract 1	140.292	7e-4	P
Gene expression data from Line27859 red fruit peel	GSM480222 extract 1	110.061	2e-4	P
	GSM480221 extract 1	110.812	2e-4	P
	GSM480223 extract 1	109.733	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	81.1772	2e-4	P
	GSM480191 extract 1	99.7106	2e-4	P
	GSM480192 extract 1	184.882	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	127.175	2e-4	P
	GSM480196 extract 1	154.902	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	124.644	2e-4	P
	GSM480198 extract 1	134.955	2e-4	P
	GSM480199 extract 1	168.099	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	77.0044	7e-4	P
	GSM480194 extract 1	93.9868	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480230 extract 1	117.795	2e-4	P
	GSM480229 extract 1	131.661	2e-4	P
	GSM480228 extract 1	167.449	2e-4	P
	GSM480231 extract 1	167.891	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	202.733	2e-4	P
	GSM480168 extract 1	197.329	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	51.9027	2e-4	P
	GSM480173 extract 1	36.9778	7e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	36.1068	0.001	P
	GSM480176 extract 1	51.0596	7e-4	P
	GSM480175 extract 1	32.896	0.008	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	46.2666	7e-4	P
	GSM480178 extract 1	37.0109	2e-4	P
	GSM480179 extract 1	41.1093	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	176.788	2e-4	P
	GSM480203 extract 1	149.56	2e-4	P
	GSM480204 extract 1	163.565	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	190.224	2e-4	P
	GSM480216 extract 1	190.275	2e-4	P
	GSM480217 extract 1	123.363	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	54.8156	7e-4	P
	GSM480184 extract 1	72.9712	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	126.065	2e-4	P
	GSM480225 extract 1	128.278	7e-4	P
	GSM480226 extract 1	118.303	2e-4	P
	GSM480227 extract 1	171.872	2e-4	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	276.506	2e-4	P
	GSM480165 extract 1	267.903	2e-4	P
	GSM480167 extract 1	262.784	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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