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Expression Template: LesAffx.59893.1.S1_at

Template Basic Information

Template name:	LesAffx.59893.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U579505
External db links:	GenBank: AW650040

Annotations for unigene SGN-U579505 (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|217073724\|gb\|ACJ85222.1\|	200	2e-49	72.09	513 bp (51.6%)	3
Description:	unknown [Medicago truncatula]
arabidopsis	blastx	At1G55190.1	171	5e-43	61.9	546 bp (54.9%)	3
Description:	prenylated rab acceptor (PRA1) family protein \| chr1:20592117-20592686 FORWARD
swissprot	blastx	No significant hits (or none blast was used over this dataset)

GO Terms Annotations

No Gene Ontology annotation

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.59893.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.59893.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.59893.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.59893.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.59893.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.59893.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.59893.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.59893.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.59893.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.59893.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.59893.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	893.98	893.98	111.20	0.12
	Gene expression data from Aft red fruit flesh	endocarp	3	3	868.86	859.45	40.38	0.05
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	591.48	593.30	7.89	0.01
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	1090.69	1090.69	94.99	0.09
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	1448.65	1521.68	163.57	0.11
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	462.45	275.21	405.17	0.88
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	639.39	584.03	112.71	0.18
	Gene expression data from Aft red fruit peel	exocarp	3	3	713.91	738.46	45.35	0.06
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	427.99	440.75	32.14	0.08
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	429.84	450.29	36.68	0.09
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	711.65	558.48	269.15	0.38
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	996.48	996.48	220.18	0.22
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	1142.76	1204.29	214.21	0.19
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	943.79	943.79	39.04	0.04
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	541.53	363.68	364.72	0.67
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1612.41	1612.41	296.14	0.18
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	707.44	707.44	43.87	0.06
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	766.42	787.08	45.94	0.06
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	556.26	581.20	77.87	0.14
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	1132.48	1106.65	51.77	0.05
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	629.78	651.62	45.46	0.07
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	809.61	783.74	108.05	0.13
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	1138.66	1138.66	203.43	0.18
	Gene expression data from Micro-Tom root	root	3	3	1269.61	1255.66	63.75	0.05

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	815.355	2e-4	P
	GSM480171 extract 1	972.61	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	834.009	2e-4	P
	GSM480205 extract 1	859.451	2e-4	P
	GSM480204 extract 1	913.111	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	582.841	2e-4	P
	GSM480215 extract 1	598.316	2e-4	P
	GSM480217 extract 1	593.296	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	1157.86	2e-4	P
	GSM480185 extract 1	1023.53	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	1562.98	2e-4	P
	GSM480187 extract 1	1261.29	2e-4	P
	GSM480189 extract 1	1521.68	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	230.024	2e-4	P
	GSM480224 extract 1	275.959	2e-4	P
	GSM480227 extract 1	1069.37	2e-4	P
	GSM480226 extract 1	274.452	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	565.066	2e-4	P
	GSM480207 extract 1	769.082	2e-4	P
	GSM480208 extract 1	584.033	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	661.569	2e-4	P
	GSM480209 extract 1	738.462	2e-4	P
	GSM480211 extract 1	741.687	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	451.795	2e-4	P
	GSM480218 extract 1	440.75	2e-4	P
	GSM480220 extract 1	391.432	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	387.486	2e-4	P
	GSM480222 extract 1	450.294	2e-4	P
	GSM480223 extract 1	451.728	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	554.045	2e-4	P
	GSM480191 extract 1	1022.42	2e-4	P
	GSM480192 extract 1	558.479	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	1152.17	2e-4	P
	GSM480195 extract 1	840.792	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480199 extract 1	1319.46	2e-4	P
	GSM480197 extract 1	904.516	2e-4	P
	GSM480198 extract 1	1204.29	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	916.184	2e-4	P
	GSM480193 extract 1	971.397	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	356.048	2e-4	P
	GSM480231 extract 1	1088.44	2e-4	P
	GSM480229 extract 1	350.315	2e-4	P
	GSM480230 extract 1	371.31	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	1403	2e-4	P
	GSM480169 extract 1	1821.81	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	676.425	2e-4	P
	GSM480173 extract 1	738.466	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	787.078	2e-4	P
	GSM480174 extract 1	798.389	2e-4	P
	GSM480175 extract 1	713.777	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	618.601	2e-4	P
	GSM480178 extract 1	468.967	2e-4	P
	GSM480179 extract 1	581.202	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	1098.71	2e-4	P
	GSM480200 extract 1	1192.09	2e-4	P
	GSM480201 extract 1	1106.65	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480214 extract 1	577.517	2e-4	P
	GSM480212 extract 1	660.19	2e-4	P
	GSM480213 extract 1	651.622	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	783.74	2e-4	P
	GSM480182 extract 1	928.243	2e-4	P
	GSM480181 extract 1	716.849	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	1282.51	2e-4	P
	GSM480184 extract 1	994.81	2e-4	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	1213.98	2e-4	P
	GSM480167 extract 1	1339.18	2e-4	P
	GSM480166 extract 1	1255.66	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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