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Expression Template: LesAffx.70148.1.S1_at

Template Basic Information

Template name:	LesAffx.70148.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U564251
External db links:	GenBank: BI932619

Annotations for unigene SGN-U564251 (manual: 0 | blast: 3 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157342922\|emb\|CAO65634.1\|	474	5e-132	76.38	927 bp (73.2%)	3
Description:	unnamed
arabidopsis	blastx	At5G20080.1	459	2e-129	72.67	933 bp (73.7%)	3
Description:	NADH-cytochrome b5 reductase, putative \| chr5:6782710-6786362 FORWARD
swissprot	blastx	P83291	459	1e-128	72.67	933 bp (73.7%)	3
Description:	NADH-cytochrome b5 reductase-like protein OS=Arabidopsis thaliana GN=At5g20080 PE=1 SV=2

GO Terms Annotations

GO:0016491oxidoreductase activity
GO:0006118electron transport

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.70148.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.70148.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.70148.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.70148.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.70148.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.70148.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.70148.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.70148.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.70148.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.70148.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.70148.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	227.99	227.99	31.89	0.14
	Gene expression data from Aft red fruit flesh	endocarp	3	3	643.10	636.92	24.32	0.04
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	300.90	313.92	41.09	0.14
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	561.44	594.50	62.49	0.11
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	430.17	336.83	243.48	0.57
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	174.80	170.99	30.70	0.18
	Gene expression data from Aft red fruit peel	exocarp	3	3	318.26	323.39	15.19	0.05
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	221.59	223.00	4.15	0.02
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	262.97	265.50	4.90	0.02
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	257.95	247.02	57.19	0.22
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	501.34	501.34	47.80	0.10
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	450.00	430.14	51.50	0.11
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	538.10	538.10	141.28	0.26
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	353.70	268.72	195.79	0.55
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	269.18	269.18	46.73	0.17
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	246.46	246.46	10.35	0.04
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	246.99	264.84	32.74	0.13
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	203.85	197.77	10.91	0.05
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	236.99	224.07	35.83	0.15
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	269.81	283.22	39.19	0.15
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	558.08	556.49	10.96	0.02
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	538.38	538.38	160.77	0.30
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	568.56	568.56	181.46	0.32
	Gene expression data from Micro-Tom root	root	3	3	309.32	312.27	36.38	0.12

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	205.437	2e-4	P
	GSM480171 extract 1	250.539	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480205 extract 1	636.915	2e-4	P
	GSM480204 extract 1	622.466	2e-4	P
	GSM480203 extract 1	669.91	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	254.878	2e-4	P
	GSM480182 extract 1	313.918	2e-4	P
	GSM480181 extract 1	333.906	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	594.499	2e-4	P
	GSM480187 extract 1	489.368	2e-4	P
	GSM480188 extract 1	600.459	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480225 extract 1	259.264	2e-4	P
	GSM480226 extract 1	377.654	2e-4	P
	GSM480227 extract 1	787.771	2e-4	P
	GSM480224 extract 1	296.009	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	170.99	2e-4	P
	GSM480206 extract 1	146.191	2e-4	P
	GSM480208 extract 1	207.228	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	330.228	2e-4	P
	GSM480209 extract 1	301.179	2e-4	P
	GSM480211 extract 1	323.388	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	224.851	2e-4	P
	GSM480218 extract 1	223.005	2e-4	P
	GSM480220 extract 1	216.918	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	265.496	2e-4	P
	GSM480222 extract 1	266.091	2e-4	P
	GSM480221 extract 1	257.315	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	207.009	2e-4	P
	GSM480190 extract 1	247.024	2e-4	P
	GSM480191 extract 1	319.816	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	467.535	2e-4	P
	GSM480196 extract 1	535.137	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	430.14	2e-4	P
	GSM480199 extract 1	508.475	2e-4	P
	GSM480197 extract 1	411.382	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480194 extract 1	638.006	2e-4	P
	GSM480193 extract 1	438.204	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	231.388	2e-4	P
	GSM480228 extract 1	259.937	2e-4	P
	GSM480230 extract 1	277.492	2e-4	P
	GSM480231 extract 1	646	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	302.225	2e-4	P
	GSM480168 extract 1	236.143	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	253.772	2e-4	P
	GSM480172 extract 1	239.141	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480174 extract 1	209.202	2e-4	P
	GSM480176 extract 1	266.933	2e-4	P
	GSM480175 extract 1	264.845	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	197.771	2e-4	P
	GSM480178 extract 1	197.329	2e-4	P
	GSM480179 extract 1	216.443	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480200 extract 1	277.498	2e-4	P
	GSM480201 extract 1	209.414	2e-4	P
	GSM480202 extract 1	224.07	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	300.53	2e-4	P
	GSM480212 extract 1	225.678	2e-4	P
	GSM480214 extract 1	283.219	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	569.753	2e-4	P
	GSM480217 extract 1	548.008	2e-4	P
	GSM480216 extract 1	556.486	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	652.057	2e-4	P
	GSM480185 extract 1	424.699	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	440.246	2e-4	P
	GSM480184 extract 1	696.873	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	344.147	2e-4	P
	GSM480165 extract 1	312.268	2e-4	P
	GSM480166 extract 1	271.56	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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