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Expression Template: LesAffx.55911.1.S1_at

Template Basic Information

Template name:	LesAffx.55911.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	data not available
External db links:	GenBank: AW217085

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.55911.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.55911.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.55911.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.55911.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.55911.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.55911.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.55911.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.55911.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.55911.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.55911.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.55911.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	106.38	106.38	34.45	0.32
	Gene expression data from Aft mature green fruit flesh	endocarp	3	3	155.42	158.82	11.00	0.07
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	110.13	112.12	11.28	0.10
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	215.80	215.80	57.13	0.26
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	175.13	182.72	30.08	0.17
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	183.01	183.01	20.51	0.11
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	102.78	48.98	113.52	1.10
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	115.34	116.31	9.22	0.08
	Gene expression data from Aft red fruit peel	exocarp	3	3	157.98	161.70	10.77	0.07
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	125.74	124.65	5.31	0.04
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	113.97	114.12	5.40	0.05
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	76.02	74.24	29.55	0.39
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	211.74	211.74	64.83	0.31
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	150.36	151.84	23.22	0.15
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	150.74	150.74	0.72	0.00
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	99.91	58.51	94.68	0.95
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	150.83	150.83	37.62	0.25
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	53.02	53.02	4.96	0.09
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	84.12	78.28	14.79	0.18
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	72.78	74.27	6.49	0.09
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	196.35	197.27	15.94	0.08
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	248.77	250.87	6.98	0.03
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	120.30	125.73	24.20	0.20
	Gene expression data from Micro-Tom root	root	3	3	92.93	90.64	12.58	0.14

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	82.0167	0.019	P
	GSM480171 extract 1	130.734	0.006	P
Gene expression data from Aft mature green fruit flesh	GSM480202 extract 1	158.816	0.001	P
	GSM480200 extract 1	143.118	0.002	P
	GSM480201 extract 1	164.323	0.001	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	120.294	0.003	P
	GSM480213 extract 1	97.9885	0.001	P
	GSM480214 extract 1	112.115	0.003	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	175.399	0.001	P
	GSM480186 extract 1	256.193	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	141.983	0.004	P
	GSM480188 extract 1	200.678	0.001	P
	GSM480189 extract 1	182.721	0.001	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	168.509	0.002	P
	GSM480184 extract 1	197.509	7e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480226 extract 1	42.9487	0.006	P
	GSM480224 extract 1	40.3892	0.030	P
	GSM480225 extract 1	55.0072	0.024	P
	GSM480227 extract 1	272.789	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	124.03	7e-4	P
	GSM480206 extract 1	105.663	7e-4	P
	GSM480208 extract 1	116.311	0.001	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	161.704	7e-4	P
	GSM480211 extract 1	166.407	7e-4	P
	GSM480210 extract 1	145.843	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	121.067	0.003	P
	GSM480219 extract 1	131.519	0.001	P
	GSM480220 extract 1	124.647	0.002	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	114.118	0.003	P
	GSM480222 extract 1	108.503	0.003	P
	GSM480223 extract 1	119.296	0.001	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	106.416	7e-4	P
	GSM480190 extract 1	74.2408	0.006	P
	GSM480192 extract 1	47.4	0.006	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	165.894	0.001	P
	GSM480196 extract 1	257.577	7e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	151.838	0.001	P
	GSM480197 extract 1	126.44	0.003	P
	GSM480199 extract 1	172.808	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	151.253	7e-4	P
	GSM480194 extract 1	150.232	0.001	P
Gene expression data from Momotaro8 red fruit peel	GSM480231 extract 1	241.297	7e-4	P
	GSM480228 extract 1	53.9905	0.003	P
	GSM480229 extract 1	63.029	0.014	P
	GSM480230 extract 1	41.3197	0.019	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	124.23	0.001	P
	GSM480169 extract 1	177.426	0.001	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	49.5096	0.046	P
	GSM480173 extract 1	56.5262	0.024	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	78.2757	0.014	P
	GSM480174 extract 1	73.1322	0.024	P
	GSM480176 extract 1	100.938	0.004	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	78.3889	0.003	P
	GSM480178 extract 1	65.6749	0.006	P
	GSM480179 extract 1	74.2678	0.006	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	179.966	7e-4	P
	GSM480204 extract 1	211.815	7e-4	P
	GSM480205 extract 1	197.274	7e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480217 extract 1	250.873	7e-4	P
	GSM480215 extract 1	240.973	7e-4	P
	GSM480216 extract 1	254.453	7e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	125.729	0.002	P
	GSM480182 extract 1	93.8498	0.003	P
	GSM480181 extract 1	141.333	0.001	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	90.6358	0.001	P
	GSM480165 extract 1	81.6548	0.002	P
	GSM480167 extract 1	106.501	7e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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