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Expression Template: Les.2960.2.S1_a_at

Template Basic Information

Template name:	Les.2960.2.S1_a_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U569753
External db links:	GenBank: BG131474

Annotations for unigene SGN-U569753 (manual: 1 | blast: 3 | go: 2 )

Manual annotations

Based on clone cLEC-6-C4, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "peptidase, serine carboxypeptidase" Annotation Keywords: protein degredation; peptidase; serine carboxypeptidase

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|21901929\|emb\|CAC86383.1\|	738	74.95	1422 bp (75.6%)	2
Description:	carboxypeptidase type III [Theobroma cacao]
arabidopsis	blastx	At3G10410.1	688	69.04	1428 bp (75.9%)	2
Description:	Symbols: SCPL49 \| SCPL49 (serine carboxypeptidase-like 49); serine carboxypeptidase \| chr3:323&hellip
swissprot	blastx	P32826	688	69.04	1428 bp (75.9%)	2
Description:	Serine carboxypeptidase-like 49 OS=Arabidopsis thaliana GN=SCPL49 PE=2 SV=2

GO Terms Annotations

GO:0006508proteolysis and peptidolysis
GO:0004185serine carboxypeptidase activity

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.2960.2.S1_a_at:ProbePair0	PM	data not available	data not available	data not available
Les.2960.2.S1_a_at:ProbePair1	PM	data not available	data not available	data not available
Les.2960.2.S1_a_at:ProbePair10	PM	data not available	data not available	data not available
Les.2960.2.S1_a_at:ProbePair2	PM	data not available	data not available	data not available
Les.2960.2.S1_a_at:ProbePair3	PM	data not available	data not available	data not available
Les.2960.2.S1_a_at:ProbePair4	PM	data not available	data not available	data not available
Les.2960.2.S1_a_at:ProbePair5	PM	data not available	data not available	data not available
Les.2960.2.S1_a_at:ProbePair6	PM	data not available	data not available	data not available
Les.2960.2.S1_a_at:ProbePair7	PM	data not available	data not available	data not available
Les.2960.2.S1_a_at:ProbePair8	PM	data not available	data not available	data not available
Les.2960.2.S1_a_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	80.72	80.72	10.73	0.13
	Gene expression data from Aft red fruit flesh	endocarp	3	3	13.08	9.75	6.11	0.47
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	12.31	13.84	3.83	0.31
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	19.55	19.78	3.81	0.19
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	34.03	34.03	3.94	0.12
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	15.96	16.71	4.91	0.31
	Gene expression data from Aft red fruit peel	exocarp	3	3	15.48	14.79	1.86	0.12
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	35.82	34.30	3.57	0.10
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	8.65	8.36	0.54	0.06
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	22.73	21.00	3.14	0.14
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	51.45	51.45	4.85	0.09
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	8.26	8.84	1.07	0.13
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	58.50	58.50	4.40	0.08
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	11.21	12.50	4.18	0.37
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	122.87	122.87	16.98	0.14
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	91.18	91.18	1.97	0.02
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	68.70	65.01	20.71	0.30
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	74.54	73.39	7.70	0.10
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	19.93	23.42	7.44	0.37
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	27.56	29.32	5.04	0.18
	Gene expression data from Micro-Tom mature green fruit flesh	mesocarp	3	3	19.50	20.76	3.55	0.18
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	24.47	24.47	0.67	0.03
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	11.35	11.05	4.83	0.43
	Gene expression data from Micro-Tom root	root	3	3	73.72	72.10	10.59	0.14

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	88.3062	7e-4	P
	GSM480171 extract 1	73.1328	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	9.74733	0.002	P
	GSM480205 extract 1	20.1286	0.004	P
	GSM480204 extract 1	9.36324	0.068	A
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	15.1409	0.003	P
	GSM480216 extract 1	13.8409	0.056	M
	GSM480217 extract 1	7.96123	0.030	P
Gene expression data from Micro-Tom red fruit flesh	GSM480187 extract 1	15.6371	0.056	M
	GSM480188 extract 1	19.782	0.001	P
	GSM480189 extract 1	23.2421	0.006	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	31.2398	0.003	P
	GSM480184 extract 1	36.812	7e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	16.7088	7e-4	P
	GSM480206 extract 1	20.4609	0.002	P
	GSM480208 extract 1	10.7182	0.002	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	14.787	0.008	P
	GSM480210 extract 1	17.5948	0.003	P
	GSM480211 extract 1	14.0645	0.038	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	39.8913	2e-4	P
	GSM480218 extract 1	34.2962	2e-4	P
	GSM480220 extract 1	33.26	0.001	P
Gene expression data from Line27859 red fruit peel	GSM480221 extract 1	8.35613	0.081	A
	GSM480222 extract 1	9.26429	0.334	A
	GSM480223 extract 1	8.32011	0.046	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480191 extract 1	21.0016	7e-4	P
	GSM480192 extract 1	20.8353	7e-4	P
	GSM480190 extract 1	26.363	0.006	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	48.0224	2e-4	P
	GSM480196 extract 1	54.8765	7e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	8.83623	0.024	P
	GSM480198 extract 1	7.03102	0.112	A
	GSM480199 extract 1	8.91379	0.030	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	55.3873	2e-4	P
	GSM480194 extract 1	61.6037	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	13.7176	0.081	A
	GSM480230 extract 1	14.5255	0.019	P
	GSM480229 extract 1	5.29002	0.195	A
	GSM480231 extract 1	11.2871	0.008	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	134.876	2e-4	P
	GSM480169 extract 1	110.866	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	89.7872	2e-4	P
	GSM480172 extract 1	92.5667	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480176 extract 1	91.0079	2e-4	P
	GSM480174 extract 1	65.0145	2e-4	P
	GSM480175 extract 1	50.0851	0.004	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480179 extract 1	67.473	7e-4	P
	GSM480177 extract 1	82.7473	7e-4	P
	GSM480178 extract 1	73.3913	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	24.9734	0.014	P
	GSM480200 extract 1	23.4205	2e-4	P
	GSM480202 extract 1	11.383	0.003	P
Gene expression data from Line27859 mature green fruit flesh	GSM480213 extract 1	21.8735	0.001	P
	GSM480212 extract 1	31.4782	0.019	P
	GSM480214 extract 1	29.3186	7e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480180 extract 1	22.2447	0.024	P
	GSM480181 extract 1	20.7616	2e-4	P
	GSM480182 extract 1	15.4906	0.008	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480185 extract 1	23.996	0.008	P
	GSM480186 extract 1	24.9375	0.003	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	10.4303	0.150	A
	GSM480226 extract 1	5.78573	0.095	A
	GSM480225 extract 1	11.6677	0.246	A
	GSM480227 extract 1	17.5113	0.006	P
Gene expression data from Micro-Tom root	GSM480165 extract 1	64.0364	2e-4	P
	GSM480166 extract 1	72.0956	7e-4	P
	GSM480167 extract 1	85.0239	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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