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Expression Template: Les.5871.2.S1_at

Template Basic Information

Template name:	Les.5871.2.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U580353
External db links:	GenBank: BE463122

Annotations for unigene SGN-U580353 (manual: 1 | blast: 3 | go: 5 )

Manual annotations

Based on clone cLER-1-C20, annotated by Rob Alba	Created 2003-01-20, last modified 2003-01-20
Putative Homology: "succinate dehydrogenase flavoprotein, alpha" Annotation Keywords: energy pathways; carbohydrate metabolism; citric acid cycle

Blast Annotations [Show All]

Database	Program	Best Match	Score	Identity	Alignment Length	Frame
genbank	blastx	gi\|15240075\|ref\|NP_201477.1\|	1118	90.38	1887 bp (72.8%)	2
Description:	SDH1-1; ATP binding / succinate dehydrogenase [Arabidopsis thaliana] >gi20454872\|sp\|O82663.1\|DH&hellip
arabidopsis	blastx	At5G66760.1	1118	90.38	1887 bp (72.8%)	2
Description:	Symbols: SDH1-1 \| SDH1-1 (Succinate dehydrogenase 1-1) \| chr5:26671002-26674450 FORWARD
swissprot	blastx	O82663	1118	90.38	1887 bp (72.8%)	2
Description:	Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thali&hellip

GO Terms Annotations

GO:0006118electron transport
GO:0006099tricarboxylic acid cycle
GO:0016491oxidoreductase activity
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
GO:0050660FAD binding

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
Les.5871.2.S1_at:ProbePair0	PM	data not available	data not available	data not available
Les.5871.2.S1_at:ProbePair1	PM	data not available	data not available	data not available
Les.5871.2.S1_at:ProbePair10	PM	data not available	data not available	data not available
Les.5871.2.S1_at:ProbePair2	PM	data not available	data not available	data not available
Les.5871.2.S1_at:ProbePair3	PM	data not available	data not available	data not available
Les.5871.2.S1_at:ProbePair4	PM	data not available	data not available	data not available
Les.5871.2.S1_at:ProbePair5	PM	data not available	data not available	data not available
Les.5871.2.S1_at:ProbePair6	PM	data not available	data not available	data not available
Les.5871.2.S1_at:ProbePair7	PM	data not available	data not available	data not available
Les.5871.2.S1_at:ProbePair8	PM	data not available	data not available	data not available
Les.5871.2.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	1055.97	1055.97	45.38	0.04
	Gene expression data from Line27859 mature green fruit flesh	endocarp	3	3	1250.23	1215.48	126.31	0.10
	Gene expression data from Line27859 red fruit flesh	endocarp	3	3	4499.20	4499.51	390.55	0.09
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	1628.57	1587.11	75.45	0.05
	Gene expression data from Micro-Tom orange fruit flesh	endocarp	2	2	4536.04	4536.04	382.78	0.08
	Gene expression data from Micro-Tom yellow fruit flesh	endocarp	2	2	3524.78	3524.78	123.49	0.04
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	1290.68	1244.02	198.74	0.15
	Gene expression data from Aft red fruit peel	exocarp	3	3	2901.51	2878.00	159.38	0.05
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	1481.67	1559.34	230.35	0.16
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	3111.15	2992.80	338.25	0.11
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	1614.48	1691.92	279.70	0.17
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	3977.00	3977.00	436.91	0.11
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	2443.62	2479.36	252.33	0.10
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	3345.96	3345.96	203.52	0.06
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	4172.13	4197.62	143.40	0.03
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	1298.02	1298.02	55.17	0.04
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	601.98	601.98	15.48	0.03
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	914.31	884.04	64.87	0.07
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	848.92	867.80	37.45	0.04
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	1445.13	1503.32	326.35	0.23
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	4181.54	4254.99	210.48	0.05
	Gene expression data from Micro-Tom red fruit flesh	mesocarp	3	3	3565.28	3579.72	98.69	0.03
	Gene expression data from Momotaro8 red fruit flesh	mesocarp	4	4	3227.51	3300.83	211.80	0.07
	Gene expression data from Micro-Tom root	root	3	3	1309.47	1292.10	118.03	0.09

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480171 extract 1	1088.06	2e-4	P
	GSM480170 extract 1	1023.88	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	1215.48	2e-4	P
	GSM480213 extract 1	1390.27	2e-4	P
	GSM480214 extract 1	1144.93	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480216 extract 1	4499.51	2e-4	P
	GSM480215 extract 1	4108.5	2e-4	P
	GSM480217 extract 1	4889.59	2e-4	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480182 extract 1	1587.11	2e-4	P
	GSM480180 extract 1	1715.65	2e-4	P
	GSM480181 extract 1	1582.94	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	4265.38	2e-4	P
	GSM480185 extract 1	4806.71	2e-4	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480184 extract 1	3437.46	2e-4	P
	GSM480183 extract 1	3612.1	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480207 extract 1	1119.42	2e-4	P
	GSM480206 extract 1	1244.02	2e-4	P
	GSM480208 extract 1	1508.6	2e-4	P
Gene expression data from Aft red fruit peel	GSM480209 extract 1	3071.34	2e-4	P
	GSM480210 extract 1	2878	2e-4	P
	GSM480211 extract 1	2755.2	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480219 extract 1	1663.15	2e-4	P
	GSM480218 extract 1	1559.34	2e-4	P
	GSM480220 extract 1	1222.52	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	2847.97	2e-4	P
	GSM480221 extract 1	3492.67	2e-4	P
	GSM480222 extract 1	2992.8	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480192 extract 1	1304.22	2e-4	P
	GSM480190 extract 1	1691.92	2e-4	P
	GSM480191 extract 1	1847.29	2e-4	P
Gene expression data from Micro-Tom orange fruit peel	GSM480196 extract 1	3668.05	2e-4	P
	GSM480195 extract 1	4285.94	2e-4	P
Gene expression data from Micro-Tom red fruit peel	GSM480197 extract 1	2175.32	2e-4	P
	GSM480198 extract 1	2676.17	2e-4	P
	GSM480199 extract 1	2479.36	2e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	3202.05	2e-4	P
	GSM480194 extract 1	3489.87	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480228 extract 1	3976.69	2e-4	P
	GSM480229 extract 1	4223.31	2e-4	P
	GSM480230 extract 1	4171.92	2e-4	P
	GSM480231 extract 1	4316.62	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480168 extract 1	1337.03	2e-4	P
	GSM480169 extract 1	1259.01	2e-4	P
Gene expression data from Micro-Tom 3rd leaf	GSM480173 extract 1	612.929	2e-4	P
	GSM480172 extract 1	591.04	2e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	884.04	2e-4	P
	GSM480174 extract 1	870.113	2e-4	P
	GSM480176 extract 1	988.79	2e-4	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	867.802	2e-4	P
	GSM480179 extract 1	805.787	2e-4	P
	GSM480178 extract 1	873.183	2e-4	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	1503.32	2e-4	P
	GSM480200 extract 1	1738.47	2e-4	P
	GSM480202 extract 1	1093.59	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480204 extract 1	4254.99	2e-4	P
	GSM480203 extract 1	4345.45	2e-4	P
	GSM480205 extract 1	3944.17	2e-4	P
Gene expression data from Micro-Tom red fruit flesh	GSM480189 extract 1	3655.95	2e-4	P
	GSM480188 extract 1	3579.72	2e-4	P
	GSM480187 extract 1	3460.16	2e-4	P
Gene expression data from Momotaro8 red fruit flesh	GSM480224 extract 1	3377.66	2e-4	P
	GSM480225 extract 1	2929.16	2e-4	P
	GSM480227 extract 1	3224.01	2e-4	P
	GSM480226 extract 1	3379.21	2e-4	P
Gene expression data from Micro-Tom root	GSM480167 extract 1	1201.08	2e-4	P
	GSM480165 extract 1	1435.22	2e-4	P
	GSM480166 extract 1	1292.1	2e-4	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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