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Expression Template: LesAffx.28368.1.S1_at

Template Basic Information

Template name:	LesAffx.28368.1.S1_at
Template type:	Probe Set
Platform:	Affymetrix GeneChip Tomato Genome Array
Internal db links:	SGN-U563660
External db links:	GenBank: BI206319

Annotations for unigene SGN-U563660 (manual: 0 | blast: 3 | go: 4 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|157350982\|emb\|CAO41139.1\|	504	1e-140	73.4	1143 bp (68.5%)	1
Description:	unnamed
arabidopsis	blastx	At5G48220.1	463	2e-130	70.83	1077 bp (64.6%)	1
Description:	indole-3-glycerol phosphate synthase, putative \| chr5:19567156-19569272 FORWARD
swissprot	blastx	P49572	446	1e-124	69.58	1050 bp (62.9%)	1
Description:	Indole-3-glycerol phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g04400 PE=2 SV=2

GO Terms Annotations

GO:0006568tryptophan metabolism
GO:0003824catalytic activity
GO:0004425indole-3-glycerol-phosphate synthase activity
GO:0008152metabolism

Probe Composition (11)

Probe name	Probe type	Template start coord	Template end coord	Spots
LesAffx.28368.1.S1_at:ProbePair1	PM	data not available	data not available	data not available
LesAffx.28368.1.S1_at:ProbePair0	PM	data not available	data not available	data not available
LesAffx.28368.1.S1_at:ProbePair10	PM	data not available	data not available	data not available
LesAffx.28368.1.S1_at:ProbePair2	PM	data not available	data not available	data not available
LesAffx.28368.1.S1_at:ProbePair3	PM	data not available	data not available	data not available
LesAffx.28368.1.S1_at:ProbePair4	PM	data not available	data not available	data not available
LesAffx.28368.1.S1_at:ProbePair5	PM	data not available	data not available	data not available
LesAffx.28368.1.S1_at:ProbePair6	PM	data not available	data not available	data not available
LesAffx.28368.1.S1_at:ProbePair7	PM	data not available	data not available	data not available
LesAffx.28368.1.S1_at:ProbePair8	PM	data not available	data not available	data not available
LesAffx.28368.1.S1_at:ProbePair9	PM	data not available	data not available	data not available

Graph: Expression Data by Experiment

Table: Expression Data by Experiment (24)

Experimental design name	Experiment name	Tissue	Experiment replicates	Replicates pValue<0.05	Mean	Median	SD	CV
Expression data from various tomato plant tissues	Gene expression data from Micro-Tom cotyledon	cotyledon	2	2	785.24	785.24	23.10	0.03
	Gene expression data from Micro-Tom mature green fruit flesh	endocarp	3	3	357.69	352.25	37.80	0.11
	Gene expression data from Micro-Tom red fruit flesh	endocarp	3	3	546.13	524.28	66.11	0.12
	Gene expression data from Momotaro8 red fruit flesh	endocarp	4	4	1057.88	1060.96	41.66	0.04
	Gene expression data from Aft mature green fruit peel	exocarp	3	3	571.72	551.54	35.26	0.06
	Gene expression data from Aft red fruit peel	exocarp	3	3	726.25	715.74	26.20	0.04
	Gene expression data from Line27859 mature green fruit peel	exocarp	3	3	650.44	657.29	49.89	0.08
	Gene expression data from Line27859 red fruit peel	exocarp	3	3	830.41	824.78	24.41	0.03
	Gene expression data from Micro-Tom mature green fruit peel	exocarp	3	3	422.12	377.80	142.41	0.34
	Gene expression data from Micro-Tom orange fruit peel	exocarp	2	2	913.18	913.18	83.66	0.09
	Gene expression data from Micro-Tom red fruit peel	exocarp	3	3	581.19	605.97	73.40	0.13
	Gene expression data from Micro-Tom yellow fruit peel	exocarp	2	2	695.65	695.65	16.07	0.02
	Gene expression data from Momotaro8 red fruit peel	exocarp	4	4	1158.07	1164.38	94.06	0.08
	Gene expression data from Micro-Tom hypocotyl	hypocotyl	2	2	637.73	637.73	38.42	0.06
	Gene expression data from Micro-Tom 3rd leaf	vascular leaf	2	2	805.13	805.13	96.73	0.12
	Gene expression data from all leaves of 3-week-old Micro-Tom plant	vascular leaf	3	3	538.29	553.94	48.57	0.09
	Gene expression data from all leaves of 5-week-old Micro-Tom plant	vascular leaf	3	3	753.55	812.45	131.07	0.17
	Gene expression data from Aft mature green fruit flesh	mesocarp	3	3	389.39	395.03	20.21	0.05
	Gene expression data from Aft red fruit flesh	mesocarp	3	3	918.75	918.33	15.83	0.02
	Gene expression data from Line27859 mature green fruit flesh	mesocarp	3	3	511.91	519.99	34.65	0.07
	Gene expression data from Line27859 red fruit flesh	mesocarp	3	3	819.02	808.51	22.85	0.03
	Gene expression data from Micro-Tom orange fruit flesh	mesocarp	2	2	658.57	658.57	13.31	0.02
	Gene expression data from Micro-Tom yellow fruit flesh	mesocarp	2	2	629.39	629.39	55.29	0.09
	Gene expression data from Micro-Tom root	root	3	3	469.81	474.42	15.92	0.03

Expression Data by Targets (experiment replicates) (67)

Experiment name	Target name	normalized_signal	pVal_call	flag
Gene expression data from Micro-Tom cotyledon	GSM480170 extract 1	801.572	0.001	P
	GSM480171 extract 1	768.901	0.001	P
Gene expression data from Micro-Tom mature green fruit flesh	GSM480181 extract 1	397.911	0.002	P
	GSM480182 extract 1	322.9	7e-4	P
	GSM480180 extract 1	352.254	0.001	P
Gene expression data from Micro-Tom red fruit flesh	GSM480188 extract 1	524.276	7e-4	P
	GSM480187 extract 1	493.715	2e-4	P
	GSM480189 extract 1	620.401	0.001	P
Gene expression data from Momotaro8 red fruit flesh	GSM480227 extract 1	1006.92	2e-4	P
	GSM480225 extract 1	1078.06	2e-4	P
	GSM480226 extract 1	1102.68	2e-4	P
	GSM480224 extract 1	1043.86	2e-4	P
Gene expression data from Aft mature green fruit peel	GSM480206 extract 1	551.176	2e-4	P
	GSM480207 extract 1	612.438	2e-4	P
	GSM480208 extract 1	551.543	2e-4	P
Gene expression data from Aft red fruit peel	GSM480210 extract 1	715.736	2e-4	P
	GSM480211 extract 1	706.95	2e-4	P
	GSM480209 extract 1	756.073	2e-4	P
Gene expression data from Line27859 mature green fruit peel	GSM480218 extract 1	657.294	2e-4	P
	GSM480219 extract 1	597.481	2e-4	P
	GSM480220 extract 1	696.557	2e-4	P
Gene expression data from Line27859 red fruit peel	GSM480223 extract 1	857.137	2e-4	P
	GSM480221 extract 1	809.303	2e-4	P
	GSM480222 extract 1	824.782	2e-4	P
Gene expression data from Micro-Tom mature green fruit peel	GSM480190 extract 1	307.14	0.002	P
	GSM480191 extract 1	581.428	0.001	P
	GSM480192 extract 1	377.801	0.002	P
Gene expression data from Micro-Tom orange fruit peel	GSM480195 extract 1	854.026	2e-4	P
	GSM480196 extract 1	972.34	0.002	P
Gene expression data from Micro-Tom red fruit peel	GSM480198 extract 1	638.998	7e-4	P
	GSM480197 extract 1	498.608	7e-4	P
	GSM480199 extract 1	605.973	7e-4	P
Gene expression data from Micro-Tom yellow fruit peel	GSM480193 extract 1	684.285	0.002	P
	GSM480194 extract 1	707.018	2e-4	P
Gene expression data from Momotaro8 red fruit peel	GSM480229 extract 1	1196.86	2e-4	P
	GSM480228 extract 1	1261.93	2e-4	P
	GSM480230 extract 1	1041.6	2e-4	P
	GSM480231 extract 1	1131.9	2e-4	P
Gene expression data from Micro-Tom hypocotyl	GSM480169 extract 1	664.9	0.001	P
	GSM480168 extract 1	610.564	0.002	P
Gene expression data from Micro-Tom 3rd leaf	GSM480172 extract 1	736.731	2e-4	P
	GSM480173 extract 1	873.532	7e-4	P
Gene expression data from all leaves of 3-week-old Micro-Tom plant	GSM480175 extract 1	483.829	7e-4	P
	GSM480174 extract 1	553.937	0.002	P
	GSM480176 extract 1	577.104	0.002	P
Gene expression data from all leaves of 5-week-old Micro-Tom plant	GSM480177 extract 1	603.365	2e-4	P
	GSM480178 extract 1	812.454	0.002	P
	GSM480179 extract 1	844.824	0.002	P
Gene expression data from Aft mature green fruit flesh	GSM480201 extract 1	366.955	2e-4	P
	GSM480200 extract 1	406.18	2e-4	P
	GSM480202 extract 1	395.033	2e-4	P
Gene expression data from Aft red fruit flesh	GSM480203 extract 1	918.332	2e-4	P
	GSM480204 extract 1	903.138	2e-4	P
	GSM480205 extract 1	934.785	2e-4	P
Gene expression data from Line27859 mature green fruit flesh	GSM480212 extract 1	473.935	2e-4	P
	GSM480214 extract 1	541.805	2e-4	P
	GSM480213 extract 1	519.988	2e-4	P
Gene expression data from Line27859 red fruit flesh	GSM480215 extract 1	845.236	2e-4	P
	GSM480216 extract 1	808.511	2e-4	P
	GSM480217 extract 1	803.32	2e-4	P
Gene expression data from Micro-Tom orange fruit flesh	GSM480186 extract 1	667.982	2e-4	P
	GSM480185 extract 1	649.158	0.001	P
Gene expression data from Micro-Tom yellow fruit flesh	GSM480183 extract 1	590.292	2e-4	P
	GSM480184 extract 1	668.484	0.002	P
Gene expression data from Micro-Tom root	GSM480166 extract 1	474.424	0.002	P
	GSM480165 extract 1	452.093	0.001	P
	GSM480167 extract 1	482.92	0.002	P

Correlation analysis (0)

No correlation analysis was found associated to this template

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